Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1046 ATGGCTTGCGATTCTTCCCCTCACGGCCGCGTGCATCAGTTTGTGTCAGAGGGCACAGAATCAAAGCCTTGTGACGCGAAATCAGCAGAATCGGTGACCCTTTTGATTAAGCACCTACCAGAAGCCATTCCTCATGACACCCTTTCTCGAATCTTCGCAAATTTCGGTGCTTTCTTGGTGCGCCCTTGCTCTAGTGCCAGGTTGAACAATTGTGCTTTTGTGGATTTTAAAAATGAGATGGTGGCATCTCAAGCACAACGTCAACTAAATGGGTTGAGATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCGAGTAAGTTAACTAGTAATGGTGAAAATAGTAGCGGTGATCTGCTGGGTAAGGACTCTAAAACATCAATGCAGAGGAATGCAAATGTAAGCAAACTTGTTGATGGAGATACAAAATCAAGAGGCCTCCCTATTCCCGAGCCAATTGCTGATAGACTTGGTGTCCATTATCCCTTTCCTCCTCTACTTGAGTATGCTTACCCTCCACCTGATGGAAATATATTAACGAATATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTCTACACTTGATGAACAAAATGAACATCCCTGCTCCATTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGTACCACCTCCTCCTACTGTAACTATAAATCCTCAGTGTGCAGATCTGTCCAGTGGTGAATCGGAGATGGAATCTTCGGATGAGGAGTACGAAGCAAGCACAAAAAAGTCTGGACAAAAGCGTGCCAGGCGTAGGACCATTGTTGGCCCTGCTATTGATAAAGGTGTGGCTCATGAGTCCGTTGGAGTAAAACCATCCACCTTGGTTCCAAAAGAATTCCCTGTGATAAAAAAGAACCATGTGTTAAAGATCAACATTGTCCCCAAAGCAAAACTAAATAAACATACAGATGATGAGACAACACAAGAGTTACAAGAGCCAGAAAAAGATGCTCCAGATCCTAACAAATTTTTGACTCCAGATGAATTAGAGAGAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAATCCTGCTCCTGTGTTGTATGTTAAGAATTTGGCAAAAGATGTGACTGCTGATGATTTCTATTATATATTTGGGTCCTTGTTTGGAAGTGTTGAGGCTGCTAAGTCTGGTCTTCAAGTCAAACTAATGCAGGAAGGACGAATGAGGGGTCAAGCATTTCTGACATTCCCCTCTATTGAATTGGCTCATCTTGCTCTGATGACTAATTACGCATTGTTAATTCACTCATGGGGAGTGGACTCTGCACTAAGCACTGAGACCACAGCATTCAGCAATGCTAGTGATATGAATGCTAGCATGTATATTCTCCTTGGGTTTATGGAAACTATGTGA 1434 0.4324 MACDSSPHGRVHQFVSEGTESKPCDAKSAESVTLLIKHLPEAIPHDTLSRIFANFGAFLVRPCSSARLNNCAFVDFKNEMVASQAQRQLNGLRFLGKVLSAERASKLTSNGENSSGDLLGKDSKTSMQRNANVSKLVDGDTKSRGLPIPEPIADRLGVHYPFPPLLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPVPPPPTVTINPQCADLSSGESEMESSDEEYEASTKKSGQKRARRRTIVGPAIDKGVAHESVGVKPSTLVPKEFPVIKKNHVLKINIVPKAKLNKHTDDETTQELQEPEKDAPDPNKFLTPDELERGKLPPEEILSLPMFKNYTAGNPAPVLYVKNLAKDVTADDFYYIFGSLFGSVEAAKSGLQVKLMQEGRMRGQAFLTFPSIELAHLALMTNYALLIHSWGVDSALSTETTAFSNASDMNASMYILLGFMETM* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1046 477 MobiDBLite consensus disorder prediction 236 265 - -
Pvu1g1046 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 453 IPR000504 GO:0003723
Pvu1g1046 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 433 IPR000504 GO:0003723
Pvu1g1046 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 99 IPR000504 GO:0003723
Pvu1g1046 477 MobiDBLite consensus disorder prediction 105 125 - -
Pvu1g1046 477 MobiDBLite consensus disorder prediction 315 346 - -
Pvu1g1046 477 Gene3D - 366 458 IPR012677 -
Pvu1g1046 477 PANTHER UNCHARACTERIZED 22 434 IPR045164 -
Pvu1g1046 477 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 22 434 - -
Pvu1g1046 477 Gene3D - 7 114 IPR012677 -
Pvu1g1046 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Pvu1g1046 477 SMART rrm1_1 372 447 IPR000504 GO:0003723
Pvu1g1046 477 SMART rrm1_1 33 102 IPR000504 GO:0003723
Pvu1g1046 477 SUPERFAMILY RNA-binding domain, RBD 31 434 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1046 Pvu-Chr1 23234534 23241379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1046 K13157 - gmx:100818499 700.279