Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1042 ATGGCTGATAGACTACCTTTTGGGGAAGGTGCTTCAATTAACAGACCACCTCTGTTTTGTGGTTTGAACTACCAATTTTGGAAAGTGAGAATGAAAATATTTATGGAATCACTTGACAATGGAATTTGGGATGCAATTGAAAATGGTCATTTTGTCCCAAAGTTTGAAAAAGATGGATCTTTCATTGAGAAGCCATGGTCTCAATGGACTGATGCAAAAAGCAAAAAGGCCAAATTCGATTGCATTGCCAAAAATATTATAACCTCTGCTTTAAATTCTTATGAGTTTTTCAGGGTCTCTCAATGCAAATCATCAAAAGAAATGTGGGACACCTTGGAAGTCACTCATGAAGGAACAAATGAGGTGAAGAGAGCTAGGAAGCATGCTCTAATCCAAGAGTATGAGATGTTCAGAATGCTTAAAGGAGAAACAATTACTGAGGTACAGAAAAGATTCACGCACATCATCAATCATCTCATGAGTCTTGACAAGACCTTTGATAGAGAAGAGCTGAACATCAAGATCTTGAAATGTCTTGATAGAGCATGGAAACCAAAGGTAACTGCTATTTCCGAATCTAAAGATCTAACATCATTAAGTGTTGCTTCTTTGTTTGGAAAGCTTAGGGAACATGAGTTAGAGATGAATAGACTCAATGTTCAAGAGAAATCTAGTTATGATAGTGATGAGGAAAACCTTAGCTTGCTGTCAAGAAAGTTCAGCAAATTCCTAAAGAGAAACCGCAACAAAGACAACAACAAAGATAGGTATGGAAACAAGAAATCCAATGATTTTAATTCCAATAACTATACTTGTTTTGGTTGTGGTGAGCAAGGACATATAAAGGCAGATTGTCCAAACAAGAGCAAGGAGAAAAAACCTAGCTACAAGGAAAAGAAAGGCAAGACAAAAAGAGCCTACATAGCTTGGGATGAAAATGAGGTGTCATCATCAAGTGAAGATGAGAAATCAAACATTTGCTTGGTTGCTGAAGATGATGATGAATCTTGCAGCTCAAGTTAG 1023 0.3695 MADRLPFGEGASINRPPLFCGLNYQFWKVRMKIFMESLDNGIWDAIENGHFVPKFEKDGSFIEKPWSQWTDAKSKKAKFDCIAKNIITSALNSYEFFRVSQCKSSKEMWDTLEVTHEGTNEVKRARKHALIQEYEMFRMLKGETITEVQKRFTHIINHLMSLDKTFDREELNIKILKCLDRAWKPKVTAISESKDLTSLSVASLFGKLREHELEMNRLNVQEKSSYDSDEENLSLLSRKFSKFLKRNRNKDNNKDRYGNKKSNDFNSNNYTCFGCGEQGHIKADCPNKSKEKKPSYKEKKGKTKRAYIAWDENEVSSSSEDEKSNICLVAEDDDESCSSS* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1042 340 Pfam gag-polypeptide of LTR copia-type 80 216 - -
Pvu1g1042 340 MobiDBLite consensus disorder prediction 284 309 - -
Pvu1g1042 340 ProSiteProfiles Zinc finger CCHC-type profile. 272 287 IPR001878 GO:0003676|GO:0008270
Pvu1g1042 340 PANTHER MYOSIN-11-LIKE 7 334 - -
Pvu1g1042 340 PANTHER - 7 334 - -
Pvu1g1042 340 MobiDBLite consensus disorder prediction 284 340 - -
Pvu1g1042 340 Gene3D - 264 296 - -
Pvu1g1042 340 SUPERFAMILY Retrovirus zinc finger-like domains 254 292 IPR036875 GO:0003676|GO:0008270
Pvu1g1042 340 SMART c2hcfinal6 271 287 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1042 Pvu-Chr1 23058641 23059723 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1042 - - pvu:PHAVU_001G100300g 659.448