Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1038 ATGGGGTTTCAATCTCTCTTTAGTTTCTTACTCTTGCTACTGCCTACAGTCTATTCCTCCCAGTATCTTGGGAACAACCTTCTATCTAATAGGAAGATATTCCCCAAACAAGAAGAAGCCATTACCTCTTATGCTGCCATTTTTGATGCTGGTAGCACTGGAAGTCGAGTGCACGTCTTCCATTTTGACCAGAACTTAGATCTCCTTCACATTGGCAATAATCTCGAATTTCAACAAAAGGTCGCACCCGGTTTGAGTTCATATGCGGATGAACCTGAAAAAGCTGCACAATCTTTGATTCCACTTTTAGAGGCAGCTGAAAATGTTGTCCCTCAGGATCTGCACTTCAAGACACCTCTTAAGCTTGGCGCAACGGCAGGTTTAAGACTTTTGGAAGGGAATGCTGCTGAAAATATATTGAATGCGGTTAGGGATATGTTCAAGAACAGAAGTACCCTGAACGTTCAATCAGATGCAGTAACTATAATCGATGGAACCCAGGAAGGTTCTTATCTATGGGTGGCAGTGAATTATCTATTGGGGAGGTTGGGCAAAAGGTTTTCAAAGACGGTGGGAGTAGTTGATCTTGGAGGTGGATCAGTTCAAATGGCATATGCCGTCTCAAGGAACACAGCAAAAAATGCCCCACTAGTACCCGATGGAGAGGATCCATACATAAATAAACTATATGTCAAAGGCAAAAAATACGATCTCTATGTTCACAGTTACCTGCGCTATGGTAGAGAATCCTTTCGTACTGAGATTTTGAAGGTCACCGGTGGTTCAGCTAACCCTTGCGTTTTGGCTGGATATGAAGGGATTTATACATATTCAGGAGTGGAGTATGCAGTGTACCCTCCAAGTTCAGGGTCCAATTATGATGCATGCAGAGAGATAGTCCTTAGGGCTATCAAATTGAACGAGCCATGTTCTCATCCCAATTGCACATTTGGTGGGATATGGGACGGTGGAAAAGGAAGTGGACAAAGAACTCTTTATGCTACTTCATCATTCTATTACCTGCCCGAACAGGCTGGTCTCATTGATGCAGAAGCTCCAAATGCCATTATTCGTGTTGTGGATCTTGAAAACCTGGCTAAGCAAGCTTGTGGAAAAACATATGAAGATGCCAAATCCAGTTATCCACGTGTTGCAGAAGAAAGAGTTCCATTTATATGCATGGACCTTACATACCAGTATGCGTTGCTGGTTGATGGATTTGGCCTTGATCCTTTGCAAGAGATTACACTGGCTAATGAAATTGAATATCAAGATGCTGTTGTGGAAACAGCATGGCCTCTTGGAACAGCCATAGAAGCTATATCATCATTGCCTAAATTTAAACGGTTTATGTATTTTATGTAA 1365 0.4227 MGFQSLFSFLLLLLPTVYSSQYLGNNLLSNRKIFPKQEEAITSYAAIFDAGSTGSRVHVFHFDQNLDLLHIGNNLEFQQKVAPGLSSYADEPEKAAQSLIPLLEAAENVVPQDLHFKTPLKLGATAGLRLLEGNAAENILNAVRDMFKNRSTLNVQSDAVTIIDGTQEGSYLWVAVNYLLGRLGKRFSKTVGVVDLGGGSVQMAYAVSRNTAKNAPLVPDGEDPYINKLYVKGKKYDLYVHSYLRYGRESFRTEILKVTGGSANPCVLAGYEGIYTYSGVEYAVYPPSSGSNYDACREIVLRAIKLNEPCSHPNCTFGGIWDGGKGSGQRTLYATSSFYYLPEQAGLIDAEAPNAIIRVVDLENLAKQACGKTYEDAKSSYPRVAEERVPFICMDLTYQYALLVDGFGLDPLQEITLANEIEYQDAVVETAWPLGTAIEAISSLPKFKRFMYFM* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1038 454 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 163 178 IPR000407 GO:0016787
Pvu1g1038 454 CDD NBD_sugar-kinase_HSP70_actin 46 205 - -
Pvu1g1038 454 Gene3D - 44 438 - -
Pvu1g1038 454 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 5 454 IPR000407 GO:0016787
Pvu1g1038 454 Pfam GDA1/CD39 (nucleoside phosphatase) family 41 445 IPR000407 GO:0016787
Pvu1g1038 454 Gene3D Exopolyphosphatase. Domain 2 164 422 - -
Pvu1g1038 454 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 5 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1038 Pvu-Chr1 22608655 22614090 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1038 43 443 Calmodulin-binding Proteins AT3G04080 53.234 3.59e-148 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1038 K14641 - gmx:100781628 669.848