Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1033 ATGGCTTCTTCTTCATCTCTCCTCCCAAGGCCACAACTTCGCACACCCCTCATCTCCAAGCTCAACTCTTTCCCAAGAGCATGGAGTCTCTTCATCCTCACACACCCTACACACCCCAAACACGGAAACAAGCAAAAGCTGTCACCTTTCACCATCAGTGCAGTATACACCCCACGTAGCACCTACACGCCTTCCACACCCTCAAAAACGGAACCCCGCAACGACCCCATCTCCGTCCTCAACGAGAGGATTCGCCGCGAGTACAGCAAGAAAGAGGTTTTCAGAACAGTGATGAACTCAGAGGAAGCGGGGAAGTACATGCGGATGGTGAAGGAGCAGCAGCAGAAGGGGTTGCAGAAGTTGAAGGGAGATAGGGAGAAGAAAGACGGGGTCTTCAGCTACAGGGTCGACCCTTACACGCTCCGTTCTGGGGACTATGTTGTGCACAAGAAAGTGGGAATTGGGAGGTTTGTTGGGATGCGGTTTGATTCTGGTAAGAATTCTTCAGAAGCCACTGAGTATGTTTTCATCGAGTATGCTGATGGCATGGCAAAACTACCTGTCAACCAGGCTTCCAAAATGCTCTATAGATATAGTCTGCCAAATGAAACCAAGAAGCCTAGGACATTGAGCAAGTTGAGTGATACTGCCGCATGGGAGAGAAGAAAGGTTAAGGGTAAGGTCGCAATACAGAAGATGGTTGTGGACCTGATGGAACTCTATCTACAAAGGCTAAAGCAAAGAAGGCCTGCATATCTGAAGACTCCTGCCTTGTCCGAATTTGAAGCTCAGTTCCCTTATGAACCCACACCAGATCAGAAACAGGCATTTATTGATGTTGAGAGGGATTTGACGGAGCAAGAAACACCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCAATACGTGCTATCTTCTGTGTTGTCTCAGCTAAAAAACAAGCGATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGATTTTCTGTATACCCTGATATCAAGGTTGGGCTATTAAGCAGGTTCCAGACCAAAGCTGAGAAAGAAGAGAATTTGGACATGATTAAGAATGGTAGCCTGGATATTATAGTTGGAACTCATTCACTCCTAGGAGATCGTGTTACATATAACAATCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCTGTGGATGTACTTACTTTATCCGCAACCCCTATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCCAGTTTAATATCAACACCACCTCCAGAAAGAGTTCCTATAAAGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAACGTCAGCCATCAAGTATGAGCTTGATCGTGGTGGTCAACTTTTTTATGTTCTGCCACGTATTAAAGGACTGGATGAAGTAATGACATTTCTTGTAGAGTCATTCCCGAATGTGGAAATAGCCATTGCCCATGGGAAGGTAGTTAACACTTACACCCTGTTTAAGGGTCTATTGCATGAAGAATGTTAG 1593 0.447 MASSSSLLPRPQLRTPLISKLNSFPRAWSLFILTHPTHPKHGNKQKLSPFTISAVYTPRSTYTPSTPSKTEPRNDPISVLNERIRREYSKKEVFRTVMNSEEAGKYMRMVKEQQQKGLQKLKGDREKKDGVFSYRVDPYTLRSGDYVVHKKVGIGRFVGMRFDSGKNSSEATEYVFIEYADGMAKLPVNQASKMLYRYSLPNETKKPRTLSKLSDTAAWERRKVKGKVAIQKMVVDLMELYLQRLKQRRPAYLKTPALSEFEAQFPYEPTPDQKQAFIDVERDLTEQETPMDRLICGDVGFGKTEVAIRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGLLSRFQTKAEKEENLDMIKNGSLDIIVGTHSLLGDRVTYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERVPIKTHLSSFSEDKVTSAIKYELDRGGQLFYVLPRIKGLDEVMTFLVESFPNVEIAIAHGKVVNTYTLFKGLLHEEC* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1033 530 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 9 515 - -
Pvu1g1033 530 Gene3D - 208 448 IPR027417 -
Pvu1g1033 530 SUPERFAMILY CarD-like 135 203 IPR036101 -
Pvu1g1033 530 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 9 515 - -
Pvu1g1033 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 446 IPR014001 -
Pvu1g1033 530 Pfam CarD-like/TRCF domain 141 241 IPR003711 -
Pvu1g1033 530 SMART CarD_TRCF_2 140 242 IPR003711 -
Pvu1g1033 530 CDD DEXHc_TRCF 255 448 - -
Pvu1g1033 530 Pfam DEAD/DEAH box helicase 291 429 IPR011545 GO:0003676|GO:0005524
Pvu1g1033 530 Gene3D - 144 200 - -
Pvu1g1033 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 451 IPR027417 -
Pvu1g1033 530 SMART ultradead3 265 457 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1033 Pvu-Chr1 22170548 22178636 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1033 - - pvu:PHAVU_001G099500g 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1033 1 22170548 22178636 Pvu1g1033 1 22170548 22178636 ECH