Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1018 ATGGCTTCGGCTACTCTCTCTGTAGCCAAACCAGCTCTTCAGGCAAATGGGAAAGGTTTCTCTGACTTCTCTGGCCTTCGCAGCTCATCAAGCTACCTTCCCTTTTCCAGAAAAACCTCAGAGGATTTCAATTCTGTCATTGCCTTCCAGACCTCTGCAGTTGGAAACAGTGGAGGATACAAGAAGGTTGTAGTAGAAGCAAAACTGAAGGTTGCCATAAACGGATTTGGAAGGATTGGAAGGAACTTCTTGAGATGCTGGCACGGTCGTAAAGAGTCCCCTCTTGATGTGATTGCCATCAATGACACTGGTGGTGTGAAACAAGCCTCTCACCTCCTCAAATATGATTCCATCCTTGGAACCTTCGATGCTGTTGTCAAGCCTGTAGGGAGTGATATCATCTCAGTTGATGGAAAAGAAATCAAAGTTGTCTCTGATCGAAACCCTGCCAACCTTCCTTGGAAGGAGTTGGGGATAGACTTGGTGATTGAAGGAACTGGGGTGTTTGTAGACAGAGAAGGAGCTGGGAAACACATTGTAGCAGGAGCTAAGAAGGTGCTCATCACAGCACCTGGTAAAGGAGACATCCCCACCTATGTGGTTGGTGTCAATGAATATGATTACAGTGGAGATGAACCAATCATCAGCAATGCCTCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGACCAGAAATTCGGTATCATCAAGGGCACAATGACTACCACTCACTCGTACACTGGTGACCAGAGGCTTCTTGATGCTAGCCACCGTGACCTAAGGCGTGCTAGGGCAGCAGCTCTGAACATTGTCCCCACTTCAACAGGAGCAGCAAAGGCAGTGGCCCTTGTGCTGCCAACCCTGAAAGGCAAACTGAATGGCATTGCACTGCGTGTGCCAACCCCAAATGTCTCAGTAGTAGACCTTGTTGTTCAGGTCTCAAAGAAGACCTTTGCAGAAGAAGTGAATGCAGCATTCAGAGAGAGTGCAGAGAAGGAGCTGAAGGGAATCCTCTCAGTCTGTGATGAGCCTCTTGTGTCTGTTGACTTCAGGTGCACTGATGTGTCCTCAACCGTTGACTCCTCGTTGACCATGGTGATGGGAGATGACATGGTGAAGGTGATTGCATGGTATGACAACGAGTGGGGTTACTCCCAAAGGGTTGTGGATTTGGCTGACATTGTTGCCAACAAATGGAAGTGA 1212 0.4827 MASATLSVAKPALQANGKGFSDFSGLRSSSSYLPFSRKTSEDFNSVIAFQTSAVGNSGGYKKVVVEAKLKVAINGFGRIGRNFLRCWHGRKESPLDVIAINDTGGVKQASHLLKYDSILGTFDAVVKPVGSDIISVDGKEIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGKHIVAGAKKVLITAPGKGDIPTYVVGVNEYDYSGDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELKGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1018 403 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 70 171 IPR020828 GO:0051287
Pvu1g1018 403 Gene3D Dihydrodipicolinate Reductase; domain 2 219 383 - -
Pvu1g1018 403 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 220 382 - -
Pvu1g1018 403 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 68 236 IPR036291 -
Pvu1g1018 403 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 403 - -
Pvu1g1018 403 SMART gp_dh_n_7 69 220 IPR020828 GO:0051287
Pvu1g1018 403 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 218 225 IPR020830 GO:0016620
Pvu1g1018 403 Gene3D - 70 395 - -
Pvu1g1018 403 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 225 381 IPR020829 GO:0016620
Pvu1g1018 403 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 178 191 IPR020831 GO:0016620
Pvu1g1018 403 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 214 232 IPR020831 GO:0016620
Pvu1g1018 403 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 241 257 IPR020831 GO:0016620
Pvu1g1018 403 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 297 314 IPR020831 GO:0016620
Pvu1g1018 403 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 337 352 IPR020831 GO:0016620
Pvu1g1018 403 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 403 IPR020831 GO:0016620
Pvu1g1018 403 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 70 393 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1018 Pvu-Chr1 21757626 21760725 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1018 K05298 - gmx:100815649 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1018 1 21757626 21760725 Pvu9g1739 9 24582643 24583761 ECH
Pvu1g1018 1 21757626 21760725 Pvu1g1018 1 21757626 21760725 ECH