Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1016 ATGAAGGTCGCATGTTGTAGCCCAGAACTTAATGTTCCCTGCTTGGGAACCCCAAGAACAAGGTTTGGTTCCGAGGAAGCCCATCTGATTCTTCAAAAATGTAGCAATTTCAAGCAGCTTAAGCAAGTGCATGGCAGAATAATCCGTTTTGGTCTCATCTATGACCAATTGCTTATGAGGAATCTGATTCAGCTCTCTTCCTCTTATGGCAAATTGAACTATGCCACTCTGGTATTTGATCAACTCAATGCCCCAGATACCTTCACCTGGAATGTCATGATTAGAGCGAACACCATTGGTGGTTCTCCTAAAATGGCGCTTCTTTTGTTCAAGGCCATGCTTTCCCAGGGCTTTGCACCTGACAAGTTTACATACCCTTTTGTGATCAGTGCTTGCGTGGCCTCTAATGCCCTTGATTTGGGAAGACTGACCCATGCTCTTGCCATCAAAATGGGGTTTTGGAGTGACCTTTATGTGCAGACCAACGTGATGAATCTCTACTTCAAGTGCCACGAAGTGGATGATGGATGGAAGGTGTTTGATAAAATGCGCGTGCGCAACGTGTTCGCGTGGACCTCTGTGATTGCTGGGTTTGTTGCTTGTGGGAGTCTGGACACTGCTAGGAAACTGTTTGAGAAAATGCCTTCCAAGAATGTTGTGTCATGGACTGCAATGATTGATGGGTATGTGAAACATGAGCGACCCATTGAAGCATTTAATCTGTTTGAAAGAATGCTGGTTGATGATGTGAGGCCAAATGAGTATACTGTGGTGAGCTTGGTCAGAGCTTGTACTGAGATGGGTAGCCTCAAGTTGGGTAGAAGGATTCATGATTTTGTCCTCAAGAATAATTTTGATCTCGGGCCTTTCTTGGGTACCGCGCTTATAGATATGTATAGCAAGTGCGGCAGTTTGGATGAGGCAAGGAAAGTGTTTGATCTGATGCAGGTACGAACCTTGGCCACTTGGAATACAATGATCACTAGCTTGGGCGTGCACGGGTTTAGGGATGAAGCCATTTCCCTTTTTGAAGAAATGGTGAAGGCAAACGAGGTTCCGGATGCTATCACTTTCGTGGGTGTTCTGAGTGCCTGTATTTATGTGAATGACACGCAACTAGCTCAGAAGTATTTCAATCTTATGACTGATCATTATGGTATAACACCTATCTTGGAACACTATACATGCATGGTTGAAATTTATACTCGTGCTGTTGAGTTGGATGAGTTTTACACGCCAGGGAGCGCCTTAGAAGCTAATCATGATGTTGCAGAATTGCTCCACAAGAGCAAACTCACTAATATAGATGACATAAAAAAACTTGTACAAAAGCAATACGAGGATTTGGATGCCTCAGAACTAGTTATAGATCATTCATCCATGAGCTCTGAACCTCAACTCTCGAGCTCAAGGAGGCTGCATATTGATATCGGCCAAACAAGTACATAG 1449 0.4396 MKVACCSPELNVPCLGTPRTRFGSEEAHLILQKCSNFKQLKQVHGRIIRFGLIYDQLLMRNLIQLSSSYGKLNYATLVFDQLNAPDTFTWNVMIRANTIGGSPKMALLLFKAMLSQGFAPDKFTYPFVISACVASNALDLGRLTHALAIKMGFWSDLYVQTNVMNLYFKCHEVDDGWKVFDKMRVRNVFAWTSVIAGFVACGSLDTARKLFEKMPSKNVVSWTAMIDGYVKHERPIEAFNLFERMLVDDVRPNEYTVVSLVRACTEMGSLKLGRRIHDFVLKNNFDLGPFLGTALIDMYSKCGSLDEARKVFDLMQVRTLATWNTMITSLGVHGFRDEAISLFEEMVKANEVPDAITFVGVLSACIYVNDTQLAQKYFNLMTDHYGITPILEHYTCMVEIYTRAVELDEFYTPGSALEANHDVAELLHKSKLTNIDDIKKLVQKQYEDLDASELVIDHSSMSSEPQLSSSRRLHIDIGQTST* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1016 482 MobiDBLite consensus disorder prediction 460 482 - -
Pvu1g1016 482 Gene3D Tetratricopeptide repeat domain 26 153 IPR011990 GO:0005515
Pvu1g1016 482 Gene3D Tetratricopeptide repeat domain 293 413 IPR011990 GO:0005515
Pvu1g1016 482 Gene3D Tetratricopeptide repeat domain 154 288 IPR011990 GO:0005515
Pvu1g1016 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Pvu1g1016 482 SUPERFAMILY TPR-like 185 349 IPR011990 GO:0005515
Pvu1g1016 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Pvu1g1016 482 Pfam PPR repeat family 85 132 IPR002885 -
Pvu1g1016 482 Pfam PPR repeat family 321 365 IPR002885 -
Pvu1g1016 482 Pfam PPR repeat family 217 264 IPR002885 -
Pvu1g1016 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 161 188 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 88 121 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 293 317 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Pvu1g1016 482 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Pvu1g1016 482 Pfam PPR repeat 161 188 IPR002885 -
Pvu1g1016 482 Pfam PPR repeat 293 317 IPR002885 -
Pvu1g1016 482 PANTHER BNAA06G32750D PROTEIN 20 433 - -
Pvu1g1016 482 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Pvu1g1016 482 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1016 Pvu-Chr1 21693697 21695663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1016 30 453 Glycoside Hydrolase AT3G49170 26.328 8.65e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1016 - - gmx:100789790 814.683