Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1004 ATGAGCAGAATAGGATCTAAATTATCTCTTCTCTCTGTTGCGCTATTACGTGTCAACCATAACTCAGTAGTTGTTAATCGTATTCATATGGTAGAACAACCCCTTATGGGAGATGCCTTCAATTTCTTTAACCTTTTTAGGTATGAAACAGTTTTAGCTCCGCCAAATTTTGGTTTATCTGTCAGTCCCTTTTCTACTTCATCTTCAACCAGAAGCCGTGGTGAGTCAACTGATGGCCCTGCACATGAGGTCTTGAGTGATGACGATGATGGGGAAGGGGATGAAGATGATGAGTACGATGATGGTCATGGCACGAATAAAGATAAGAATGGTACCAATTGTAGTAAGTTACATTTAAGAGATGATGATCTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCATGAGATGGGTTCTGGAGCATCTGACATTAAGCAGAAGCTTGAGCATTGCAGTGTGGCGCTATCACAAGAGTTGGTTGTGGAGGTCATTTCAAAAACTCGCAATGATTGGGAAGCGGCTTTCACATTTTTCTTATGGGCTGGCAAGCAGCCCGGGTATGCTCATTCGGTTCGGGAGTATCATTCTATGATCTCCATTCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGACCTTAATTGAGGAAATGAGAGGAGGTAGAACTGGTCCATCTTTTGTCACTCCACAGACACTGTTGATCATGATCAGGAGATACTGTGCTATACATGATGTTGCAAGGGCTATCAATACTTTCTATGCTTATAAACGGTTTAACTTTCAAATTGGGCTAGAGGAATTTCAAAGCCTTCTTTCTGCCCTTTGCCGGTATAAGAATGTGCAGGATGCTGAGAACTTACTGTTCTGCAACAAAAATGTATTCCCATTTGACATTAAAAGCTTTAACATAGTTCTGAATGGATGGTGTAATTTGATTGTTAGCACTAGTCAGGCAGAAAGAATATGGAAGGAGATGAGCAAGAGAGGAATCAAACACGATGTTGTCTCTTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTACACTTTACAAGGTGCTTAGGATGTTTGACGAAATGAAGAATAGGAAGATCACTCCCGACAGGAAAGTTTATAATGCAGTAATTTATGCTCTAGCAAAGGGTAGGCTTGTGAAAGAAGCTGCCAATCTTATTGAAAAAATGGAGGACAACAACATTATTCCGAATGTTGTTACATACAACTCCTTGATCAAACCTCTTTGTAAAGCTCGCAAAGTTGATGAAGCTAAACAACTTTTTGATGAGATGTTGGAGCGGAGCCTATCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATGTTAAGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAAATGAGAGAGTTGGGATGCTACCCAACCAATGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGTGCCAGTTTGATGATGTATTTAAGATATGGGATGCAATGAGGGAAGATGGACTCAGCCATGATCGTAGTTCATATATAGTTCTGATTCATGGGCTCTTTCTAAATGGAAAACTAGAAGAAGCATACAGATATTATGCAGAGATGCAAGAGAAAGGCTTCCTTCCTGAACCAAAGACGGAAGAAATGCTTCAGGCATGGGTTTCTGGGAAACAGGCAAAGGAGGACCAGAAGGGTAACAAGAGAACGAGGTTTTTCTTTATGGGATTAAGACGAGGTCCAATGATACTTATTGGTCAGCAGCATACCTCAAATTCCATTTTGATTACCCCAAAGAGGTGGATGGCATGCGGGTGCATAGCCAGACATCAATTTCCTCATCATAAGCAAGAGCTGCAAG 1852 0.4044 MSRIGSKLSLLSVALLRVNHNSVVVNRIHMVEQPLMGDAFNFFNLFRYETVLAPPNFGLSVSPFSTSSSTRSRGESTDGPAHEVLSDDDDGEGDEDDEYDDGHGTNKDKNGTNCSKLHLRDDDLAQDVKTILDIMHEMGSGASDIKQKLEHCSVALSQELVVEVISKTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWTLIEEMRGGRTGPSFVTPQTLLIMIRRYCAIHDVARAINTFYAYKRFNFQIGLEEFQSLLSALCRYKNVQDAENLLFCNKNVFPFDIKSFNIVLNGWCNLIVSTSQAERIWKEMSKRGIKHDVVSYGSIISCYSKSSTLYKVLRMFDEMKNRKITPDRKVYNAVIYALAKGRLVKEAANLIEKMEDNNIIPNVVTYNSLIKPLCKARKVDEAKQLFDEMLERSLSPTIQTFHAFFRMLRTKEEVFELLDKMRELGCYPTNETYIMLIRKFCRWCQFDDVFKIWDAMREDGLSHDRSSYIVLIHGLFLNGKLEEAYRYYAEMQEKGFLPEPKTEEMLQAWVSGKQAKEDQKGNKRTRFFFMGLRRGPMILIGQQHTSNSILITPKRWMACGCIARHQFPHHKQELQ 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1004 617 Pfam PPR repeat family 403 450 IPR002885 -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 333 IPR002885 -
Pvu1g1004 617 Pfam PPR repeat 474 503 IPR002885 -
Pvu1g1004 617 Pfam PPR repeat 509 538 IPR002885 -
Pvu1g1004 617 Pfam PPR repeat 195 219 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 195 219 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 406 439 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 509 540 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 474 506 IPR002885 -
Pvu1g1004 617 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Pvu1g1004 617 MobiDBLite consensus disorder prediction 100 116 - -
Pvu1g1004 617 MobiDBLite consensus disorder prediction 63 116 - -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Pvu1g1004 617 Gene3D Tetratricopeptide repeat domain 419 576 IPR011990 GO:0005515
Pvu1g1004 617 Gene3D Tetratricopeptide repeat domain 165 315 IPR011990 GO:0005515
Pvu1g1004 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 47 568 - -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Pvu1g1004 617 PANTHER OS01G0816000 PROTEIN 47 568 - -
Pvu1g1004 617 Gene3D Tetratricopeptide repeat domain 316 418 IPR011990 GO:0005515
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Pvu1g1004 617 Pfam Pentatricopeptide repeat domain 321 379 IPR002885 -
Pvu1g1004 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1004 Pvu-Chr1 21344905 21346869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1004 294 562 Miscellaneous Gene Families AT4G11690 26.007 8.07e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1004 - - gmx:100785546 909.442