Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0985 ATGCATTCAATACTATATCGTGCTATTATTGTTGGTGATTCCCGTTGCATATGTTATACATCTAGGAATTTTTGTTCTGCTTTAGGAATTAGACATTTTTCCCATAAAGAACAATGTGAAGAAGAGCTTACCAGGTACCTGGACATTATCACTGTGAAACTTGGCAAAGGAAGCAGTGAGGAAGAAACCCTTCACACCCTCTCCAACGATCAAGCTTGTGACGCCATACCCATCTCCCAAAACCTTGTTCATCTGTTGCTCCAGCGATACAAGGATGATTGGCAGTGTGCACTGGGGGTATTCAGATGGGCTGGTTCACAGTCGAGCTTTAGACATTCGCCGGAGTCATACGATATGATGGTCGATATATTGGGTAGAATGAAGGTTATGAAAAAGTTGAGGGATTTGTTAGAAGAAATGCGTAAGAGTGGTGTGGTCACTATGAATACTGTGGCTAAGGTAATGAGACGGTTTGTTGGGGCAGGGCAGTGGGTAGATGCAGTGAAGATATTTGATGATTTGCAAGCTCTTGGGTTGGAGAAGAACATAGAATCCATGAACTTGTTGCTTGATACCCTATGCAAAGAGAAATTTGTCGAGCAAGCTCGTGAAATTTTCTTGAAGCTGAAGCAGCACATTGCTCCTAATGCTCACACGTTCAACATATTCATTCACGGATGGTGCAAAATCTGCCGTGTGGAGGAGGCACATTGGACAATTGAAGAGATGAAAGGATATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACTATCATTCAGTGTTACTGTCAAGAAGGGGATTTCAGCAAGGTGTATGAGCTTCTTGATGAAATGCAGGCTCAAGGGTGCTCAGCTAATGTGGTAACTTATACTACTATCATGAGTGCACTGGCAAAGGCTGAAAAGTTTGAGGAAGCTTTGAAAATACCTGAGAGAATGAGGTCTTCTGGATGTAGGCCTGATACACTTTTCTTCAATTCGTTCTTATATACATTGGGGAGAGCAGGTAGATTAGATGATGCTGCCTATGTATTCAACGTGGAAATGCCTAAGGCTGGTGTTTCCCCAAATACTTCCACCTATAATTCATTGATTTCTATGTTTTGTCATTATGCTCAAGAAAAGAGAGCTTTTGAAATACTAAAGGAGATGGAAAATTCAGACTATTGTAAGCCTGATGCTCAGACTTACCACCCATTGATCAAGTCTTGCTTTAGAACTGGAATAATAGATAGTGTGTTGAATGATATATTAAATGACATGATTAATAAATATCATCTCAGTCTTGATCTTTCAACCTATACACTTCTAATTCACGGGCTTTGTAGAGGAGATAGATGCAATTGGGCGTTCTCTCTGTTCGAGGAGATGATTGATCAAGATATAGTTCCTAGATTCAGAACTTGTCGATTGCTATTGGATGAAGTCAAGCAGAAAAATATGTTTCAAGCTGCTGAGAAAATTGAGGATCTTCTGAAAAAATTGTAA 1488 0.4019 MHSILYRAIIVGDSRCICYTSRNFCSALGIRHFSHKEQCEEELTRYLDIITVKLGKGSSEEETLHTLSNDQACDAIPISQNLVHLLLQRYKDDWQCALGVFRWAGSQSSFRHSPESYDMMVDILGRMKVMKKLRDLLEEMRKSGVVTMNTVAKVMRRFVGAGQWVDAVKIFDDLQALGLEKNIESMNLLLDTLCKEKFVEQAREIFLKLKQHIAPNAHTFNIFIHGWCKICRVEEAHWTIEEMKGYGCRPCVISYSTIIQCYCQEGDFSKVYELLDEMQAQGCSANVVTYTTIMSALAKAEKFEEALKIPERMRSSGCRPDTLFFNSFLYTLGRAGRLDDAAYVFNVEMPKAGVSPNTSTYNSLISMFCHYAQEKRAFEILKEMENSDYCKPDAQTYHPLIKSCFRTGIIDSVLNDILNDMINKYHLSLDLSTYTLLIHGLCRGDRCNWAFSLFEEMIDQDIVPRFRTCRLLLDEVKQKNMFQAAEKIEDLLKKL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pvu1g0985 495 Pfam PPR repeat 116 145 IPR002885 -
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 356 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 116 146 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 433 464 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 288 322 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 360 393 IPR002885 -
Pvu1g0985 495 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Pvu1g0985 495 Pfam PPR repeat family 356 405 IPR002885 -
Pvu1g0985 495 Pfam PPR repeat family 181 229 IPR002885 -
Pvu1g0985 495 Pfam PPR repeat family 250 299 IPR002885 -
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Pvu1g0985 495 Gene3D Tetratricopeptide repeat domain 349 495 IPR011990 GO:0005515
Pvu1g0985 495 PANTHER OS02G0601600 PROTEIN 25 495 - -
Pvu1g0985 495 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 25 495 - -
Pvu1g0985 495 Gene3D Tetratricopeptide repeat domain 280 348 IPR011990 GO:0005515
Pvu1g0985 495 Gene3D Tetratricopeptide repeat domain 54 211 IPR011990 GO:0005515
Pvu1g0985 495 Gene3D Tetratricopeptide repeat domain 212 279 IPR011990 GO:0005515
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Pvu1g0985 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pvu1g0985 495 Pfam PPR repeat 427 457 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0985 Pvu-Chr1 20634238 20636037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0985 253 485 Miscellaneous Gene Families AT4G11690 30.472 6.07e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0985 - - vra:106777545 938.717