Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0972 ATGTTAGCCCCAAAACTGCAATCCCGTTCTCCATCATCACTGCTTAGAAGCCTCTCCACTCTGGCACTCCTCGCCGACAACTGCACCACCCTGGACCAGCTCAAGCAGCTTCACGCCCAGATGATCGTTTCCGCCGTCGTCACTTCCGATCCCTTCGCCGTCAGCCGCTTGCTCTCCTCCTGCGCCCTCTCCCCCTTCGCCGACCTCTCCCACGCTTCCAGAATCTTCCATTCCGCACCCCACCCCAACTCCTTTATGTGGAACACCCTCATCCGCGCCCAGCCCAATGCGCTCCACGCGCTCTCTCTCTACCTCGCCATGCGCCGCAACCGAGTTCTCCCCGGTAAACACACCTTCCCCTTCCTCTTCAAAGCATGCTCCAAATTGCGCAACCTCCCAGCGTGCAAACAACTCCACGTCCACGTCATGAAGTTCGGGTTGGCTTCCGATTTGCATGTGGCTAACGCCTTGGTCCGGTGTTACTCGGTTTCGGGCAATTGGATCGATGCCCGCCACTTGTTTGATGAAATGCCCGAGAGAAGTTTGAGTCTTTGGACCACTATGATTTGTGGGTACGCTCAGAATTTCCGCTCCAACGAGGCTTTGAAGCTTTTTAATGAGATGGTTGGGGCGGGCTTTGAGCCCGGTGGTGCTACCCTGGCTTCGGTATTGTCTGCGTGTGCTCGGTCGGGTTATCTTGAGTTTGGGGAAATTATTCATGGCTTTGTGAAGGTGAAAGGGGTTGGACTTGGAGATGGGGTGATTCTTGGGACGGCGTTGGTTTACATGTATGCCAAGAATGGGGAGATTGCAAAGGCTAGGAGGTTGTTTGATGAAATGCCAGAGAGGAATGTTGTTACATGGAATGCTATGATATGTGGGTTGGGTGCTCATGGACATGTGGAAGATGCTCTTGGTTTGTTTGAGAAGATGAAGAGGGAGAAGGTTGTTTGTCCTAATGGTGTCACCTTTGTTGGAGTTTTGTCGGCTTGTTGTCATGCTGGCTTGATTGATGTTGGTCGTGAAATTTTTCGTTCGATGAAGTTGGTGTATAGAATTGAGCCGAAGATTGAACATTATGGATGCTTGGTTGATCTTCTAGGGAGAGCAGGAAGGTTGCTGGAGGCAGAGGAGCTGGTGAAAGGAATGCCGTGGAAGGCTGATGTGGTCATTTTTGGAGCTTTGTTGGCAGCTAGCAAGAGTAGTGGCAATACTGAGGTTGCTGTAAGACTGGTGAAGGAAATTATTGCTTTGGAACCACAAAATCACGGTGTTCATGTTGCTTTGTCTAATATGTATGCAGAGGCCGGACAATGGCAGGAAGTTTTGAGACTGAGGAAGACAATGAAAAAAGAGAAACTCAAGAAAGTGCCAGGATGGAGTCTTGTCGCCACTTAG 1398 0.5079 MLAPKLQSRSPSSLLRSLSTLALLADNCTTLDQLKQLHAQMIVSAVVTSDPFAVSRLLSSCALSPFADLSHASRIFHSAPHPNSFMWNTLIRAQPNALHALSLYLAMRRNRVLPGKHTFPFLFKACSKLRNLPACKQLHVHVMKFGLASDLHVANALVRCYSVSGNWIDARHLFDEMPERSLSLWTTMICGYAQNFRSNEALKLFNEMVGAGFEPGGATLASVLSACARSGYLEFGEIIHGFVKVKGVGLGDGVILGTALVYMYAKNGEIAKARRLFDEMPERNVVTWNAMICGLGAHGHVEDALGLFEKMKREKVVCPNGVTFVGVLSACCHAGLIDVGREIFRSMKLVYRIEPKIEHYGCLVDLLGRAGRLLEAEELVKGMPWKADVVIFGALLAASKSSGNTEVAVRLVKEIIALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKKEKLKKVPGWSLVAT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0972 465 Pfam E motif 404 463 IPR046848 -
Pvu1g0972 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 180 IPR002885 -
Pvu1g0972 465 Pfam PPR repeat family 283 333 IPR002885 -
Pvu1g0972 465 Pfam PPR repeat family 185 229 IPR002885 -
Pvu1g0972 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 464 - -
Pvu1g0972 465 TIGRFAM PPR: pentatricopeptide repeat domain 322 348 IPR002885 -
Pvu1g0972 465 TIGRFAM PPR: pentatricopeptide repeat domain 155 182 IPR002885 -
Pvu1g0972 465 TIGRFAM PPR: pentatricopeptide repeat domain 258 286 IPR002885 -
Pvu1g0972 465 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Pvu1g0972 465 TIGRFAM PPR: pentatricopeptide repeat domain 184 215 IPR002885 -
Pvu1g0972 465 Gene3D Tetratricopeptide repeat domain 95 249 IPR011990 GO:0005515
Pvu1g0972 465 Gene3D Tetratricopeptide repeat domain 263 457 IPR011990 GO:0005515
Pvu1g0972 465 PANTHER OS11G0483950 PROTEIN 11 464 - -
Pvu1g0972 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Pvu1g0972 465 Pfam PPR repeat 155 180 IPR002885 -
Pvu1g0972 465 Pfam PPR repeat 359 384 IPR002885 -
Pvu1g0972 465 SUPERFAMILY TPR-like 185 448 IPR011990 GO:0005515
Pvu1g0972 465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0972 Pvu-Chr1 20043080 20044477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0972 20 463 Glycoside Hydrolase AT3G49170 34.292 1.53e-74 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0972 - - vra:106753852 783.097