Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0938 ATGGTAATAACAAACCCTGTGCGTCATTTTCACAGACACCTTGCCAACCAAGTACTGGTCTTGGTAATCAAAGACCTTCCATTCGACGCGCACCCACCACAACCATCACCGTCAGGTGCGCCGTGGACAAATGACGCCGTCACGGAGGTTCTCCGCTCCATCTCCCGCTATACCCTCCAATCACCTCGCTCCATCGGTCGCCAGAGCGGCTTCCGCCACCGCACCCCGCTGCGGCAGCGCAACCTCAACCTCGAACACCACAAGCTCCGCAACAACACCCTTGTCTTGGGCCCCGCCGCCCACCAAGACCCCTACAAGGTCCACCTCGGCCCACTAAAGGCCCTCGAGTTCTTCCGCTGGGTGGAAGCCCGCTTCGCCTTTTCCCATTCCGAAGCCACGTGCCGCGAGCTGGCCTGCCTCCTCGCCCGCGCCAGCACAATCAAGCCCCTCTGGAACTTCCTCAAACAGTACCCTCACGTGACCACCGCCACCGTCACGTGCGTCATCAAACTCCTCGGAGAACAAGGCCTCGCCGACGAAGCCTTGCTCACCTTCCACCGAATGAAACAGTTCCGCTGCAAACCCGATACCCACTCCTACAACGCGCTGATCCACGCGCTCTGCTGCGTGGGGAACTTCACGAAGGCGCGTTCCCTTCTCCAGCAAATGGAGCTTCCTGGTTTCCAGTGCCCGCCGGACACCTTCACCTACACGATTCTCATTAGCTCTTACTGCCGCCACGGCAGGCTCACCGGCTGCCGGAAGGCCACGCGCCGGAGGATTTACGAGGCCGGGCGTCTCTTCCGGTCGTTGCTTTTCAAAGGGTTGGTTCCCGATGTTGTGACTTACAATGCCCTAATTGATGGGTGCTGTAAGACGTGGCGCGTGGAGAGGGCTTTGGAGTTGTTGGATGATATGAAGACAAGGGGTGTTGTTCCGAACCATGTTACTTATGGGTCTTTCATAAGGTACTATAGTGTTGTGAATGAGATTGACAAGGCTGTTGAGATGTTGAGGGAAATGCAGAGGTTGGGGTATGGGGTTCCCGGTTCGAGTTCGTATACTCCCATCATTCACGCGCTTTGTGAAGCTGGGAGGGTTGTTGAGGCTTGGGGGTTTCTTGTTGAGTTGGTTGATAGCGGATCCGTGCCCAGAGAGTATACTTATGGGTTGGTTTGTGATGCGCTTCGCGCTGCCGGGGAGTGTGGCTTGTTGTTGGAGGAGGGTGGGGTACACAAGAGAATAAAGGATGGCATATGGAATAGGTATAGGCAAATGATGAAGGTGAAACCTGTTATGGCTCGCAGGGGCTATCCTGAGATGGAGGATCCAGTTTGA 1338 0.562 MVITNPVRHFHRHLANQVLVLVIKDLPFDAHPPQPSPSGAPWTNDAVTEVLRSISRYTLQSPRSIGRQSGFRHRTPLRQRNLNLEHHKLRNNTLVLGPAAHQDPYKVHLGPLKALEFFRWVEARFAFSHSEATCRELACLLARASTIKPLWNFLKQYPHVTTATVTCVIKLLGEQGLADEALLTFHRMKQFRCKPDTHSYNALIHALCCVGNFTKARSLLQQMELPGFQCPPDTFTYTILISSYCRHGRLTGCRKATRRRIYEAGRLFRSLLFKGLVPDVVTYNALIDGCCKTWRVERALELLDDMKTRGVVPNHVTYGSFIRYYSVVNEIDKAVEMLREMQRLGYGVPGSSSYTPIIHALCEAGRVVEAWGFLVELVDSGSVPREYTYGLVCDALRAAGECGLLLEEGGVHKRIKDGIWNRYRQMMKVKPVMARRGYPEMEDPV* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0938 445 Gene3D Tetratricopeptide repeat domain 347 408 IPR011990 GO:0005515
Pvu1g0938 445 Gene3D Tetratricopeptide repeat domain 108 226 IPR011990 GO:0005515
Pvu1g0938 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Pvu1g0938 445 Gene3D Tetratricopeptide repeat domain 229 346 IPR011990 GO:0005515
Pvu1g0938 445 Pfam PPR repeat family 278 322 IPR002885 -
Pvu1g0938 445 Pfam PPR repeat family 195 246 IPR002885 -
Pvu1g0938 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Pvu1g0938 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pvu1g0938 445 PANTHER BNAANNG11840D PROTEIN 40 438 - -
Pvu1g0938 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pvu1g0938 445 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 40 438 - -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 198 224 IPR002885 -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 316 345 IPR002885 -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 235 254 IPR002885 -
Pvu1g0938 445 TIGRFAM PPR: pentatricopeptide repeat domain 353 384 IPR002885 -
Pvu1g0938 445 Pfam PPR repeat 164 193 IPR002885 -
Pvu1g0938 445 Pfam PPR repeat 353 381 IPR002885 -
Pvu1g0938 445 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0938 134 409 Glycosyltransferase AT1G05670 28.623 3.54e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0938 - - gmx:100784365 776.933