Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0893 ATGGAAACAACCACAACACTCACGATGACTCGGTTAGCGTTCAGAACATCACCATCAACCGCACGTCGCAAACTTGCTTACTCCACATGGCAGACCAATACGGCCAACCTTACGAGCATGTTCGGCAAATACGTCGACAAAACCAGCGTCTCTAGCTGGAACACCGTCATCGCGGACCTCGCTCGAAGTGGCGATTCCGTCGAAGCTCTCAGCGCATTTTCCTCCATGCGCAAGCTCTCTCTACATCCCAACCGCTCCACCTTCCCCTGCGCCATCAAGGCCTGCGCCGCGCTCTCCGACCTCCGCGCCGGCGCTCAGACCCACCAGCAGGCGTTCGTCTTTGGCTTCGGCCGCGACATCTTCGTCTCCGCCGCGCTCGTCAATATGTACTCCAAATGCGGTTGCCCTGACCACGCGCGCCTCCTGTTCGACGAAATTCCCGCCAGAAACGCCGTTTCGTGGACGTCCATGATTGCAGGCTACGTCCAAAACGACCGTCCCCACGACGCCGTTTGCCTCTTTAAGGAACTGTTGGTTGAGCAGAGTGGGTATGTGGAATCTGAGGATGATGCTTTCGTGGATTCCATGCTTGTGGGGTGTGTTCTATCCGCGTGTTCGCGGGTGGGCAGGAGGAGTACGACTGAAGGAGTTCATGGGTTGGTGGTCAAGAGGGGGTTTGAGGGGTGTGTGGGTGTTGGGAATACTTTGATGGATGCTTATGCTAACTGTGGAGAAATGGGGGTGGCGAGGAAGGTGTTTGATGGAATGCATGAGAGTGATGTCTGCACTTGGAACTCTATAATTTCTAAGTATGCGCAGAATGGGTTGTCAGCTGAGGCTTTCTGTGTTTTTGCTGACATGGTGAAGAGTGGCAAGGTTAGATATAACGAGGTGACATTGTCTGCGGTGTTGTTGGCCTGCGCGAATTCAGGAGCTTTACAGCTGGGAAAATGCATACATGATCAGGTTATAAAGATGGATTTGGAGGATAGTGTGGTTGTAGGTACATCTATAGTAGATATGTACTGCAAATGTGGGAGAGTTGAGATGGCTAGGAAGGCATTTGATCGCATGAAAGTGAAGAATGTTAAGTCATGGACTGCTATGGTTGCTGGTTATGGAATGCATGGCCGTGCAAAAGAGGCTATGGAAGTCTTCTACGAGATGATAAGGTCTGGAGACAAGCCAAATTACATTACTTTTGTGTCAGTTTTAGCTGCATGCAGCCATGCTGGTTTGTTAAAAGAAGGCTGGCATTGGTTTAATAGAATGAAAGGTGAATTTAATGTTGTACCTGGGATTGAGCATTATTCGTGCATGGTTGATCTTCTTGGGCGTGCTGGCTATCTTAATGAGGCTTATGGTTTGATCCAGGAAATGAATGTGAAACCTGATTTTATAATCTGGGGTTCCCTTCTTGGGGCTTGTAGGATTCACAAGAATGTGGAACTTGGGGAGATCTCTGCTAGAAAACTATTTCAGTTAGATCCAAGTAGTTGTGGGTACTATGTTCTACTGTCCAATATTTATGCTGATGCTGGAAGGTGGGATGAAGTTGAGAGGATGAGAATATTGATGAAGAATCGTGGATTACTTAAAACCCCTGGATTTAGTATAGTGGAGCTCAAAGGTAGGATACATGTATTCTTAGTTGGAGACAAAGAGCATCCTCAACATAAGAAGATTTATGAGTACCTAGACAAATTAAATGTCAAGCTGCAAGAACTTGGGTATATGCCATATTTGACCTCGGTGCTTCACGATGTTGATGAGGAAGAGAAAGGAATGGTTCTAAGAGTTCATAGTGAGAAACTAGCTGTTTGCTTTGGAATCATGAATTCAGTTCCTGGATCAATAATCCATATCATAAAAAATCTTAGAATTTGTGGTGACTGCCACATTGCAATTAAACTTATTTCAAAAGTAGTAAATCGAGAAATTGTTGTCAGAGATTCTAAGCGGTTTCATCATTTTAAGGATGGGATGTGTTCATGTGGGGACTATTGGTGA 2010 0.4637 METTTTLTMTRLAFRTSPSTARRKLAYSTWQTNTANLTSMFGKYVDKTSVSSWNTVIADLARSGDSVEALSAFSSMRKLSLHPNRSTFPCAIKACAALSDLRAGAQTHQQAFVFGFGRDIFVSAALVNMYSKCGCPDHARLLFDEIPARNAVSWTSMIAGYVQNDRPHDAVCLFKELLVEQSGYVESEDDAFVDSMLVGCVLSACSRVGRRSTTEGVHGLVVKRGFEGCVGVGNTLMDAYANCGEMGVARKVFDGMHESDVCTWNSIISKYAQNGLSAEAFCVFADMVKSGKVRYNEVTLSAVLLACANSGALQLGKCIHDQVIKMDLEDSVVVGTSIVDMYCKCGRVEMARKAFDRMKVKNVKSWTAMVAGYGMHGRAKEAMEVFYEMIRSGDKPNYITFVSVLAACSHAGLLKEGWHWFNRMKGEFNVVPGIEHYSCMVDLLGRAGYLNEAYGLIQEMNVKPDFIIWGSLLGACRIHKNVELGEISARKLFQLDPSSCGYYVLLSNIYADAGRWDEVERMRILMKNRGLLKTPGFSIVELKGRIHVFLVGDKEHPQHKKIYEYLDKLNVKLQELGYMPYLTSVLHDVDEEEKGMVLRVHSEKLAVCFGIMNSVPGSIIHIIKNLRICGDCHIAIKLISKVVNREIVVRDSKRFHHFKDGMCSCGDYW* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0893 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 180 IPR002885 -
Pvu1g0893 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pvu1g0893 669 Pfam E+ motif 546 569 IPR046849 -
Pvu1g0893 669 Gene3D Tetratricopeptide repeat domain 50 210 IPR011990 GO:0005515
Pvu1g0893 669 Gene3D Tetratricopeptide repeat domain 289 405 IPR011990 GO:0005515
Pvu1g0893 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Pvu1g0893 669 Pfam DYW family of nucleic acid deaminases 577 669 IPR032867 GO:0008270
Pvu1g0893 669 Gene3D Tetratricopeptide repeat domain 406 537 IPR011990 GO:0005515
Pvu1g0893 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 361 IPR002885 -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 271 662 - -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 193 311 - -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 26 182 - -
Pvu1g0893 669 Pfam E motif 479 541 IPR046848 -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 182 - -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 271 662 - -
Pvu1g0893 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 193 311 - -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 52 84 IPR002885 -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 336 363 IPR002885 -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 152 178 IPR002885 -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 262 291 IPR002885 -
Pvu1g0893 669 TIGRFAM PPR: pentatricopeptide repeat domain 365 393 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat 125 147 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat 436 460 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat 152 178 IPR002885 -
Pvu1g0893 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 49 83 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat family 260 308 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat family 361 408 IPR002885 -
Pvu1g0893 669 Pfam PPR repeat family 49 96 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0893 Pvu-Chr1 15440936 15444096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0893 43 669 Glycoside Hydrolase AT3G49170 38.401 9.42e-150 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0893 - - gmx:102661399 1165.21