Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0817 ATGAAGAAGGCGTCACCTGTGACGATGGATCACGTGCTTCTAGCGTCGCAGGAGACGAAGGAGGAGCGCGAAGTGCGGATTCGGGGCCTCTTCGAATTCTTCGACAGAGACAATCACGGGTTCTTGGACTACGCGAACATCGAGGCCGGTCTATCGGCGCTTCAGATTCCGTCGGAGTACAAGTACGCGAAGGATTTGTTGAACGCTTGCGATGAGAACAAGGATGGGAGAGTGGATTTCCAAGAGTTCAAGAGTTACATGGACGACAAGGAGTTGGATATTTACCGCATTTTCCAGGCCATCGATGTTGCGCACAATGGCTGCATTTTGCCTGAGGAGCTTTTGGAGGCTCTCGTAAAAGCAGGGATTAAGATTGATGATGAGGAACTTGCCCGTTTTGTTGAGCATGTTGATAAGGATAATAATGGTGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCATGAGGCAACCATCGAGAACATCTACCATTATTTGGAGCGGATATGTATGGTTGATATTGGGGAACAGTCTGTTATTCCAGCAGGCATTAGTAAGCACATTGATGCCACTAGGTATCTGATTGCAGGAGGAGTAGCAGGTGCTACATCACGCACAGCAACTGCACCACTTGATCGTCTAAAGGTTGTATTGCAAGTCCAAACAGCACGAGCTCACATAACGCCTGCAATAAAAGCTATATGGAAAGAGGGTGGTTTGTTAGGATTTTTTCGAGGGAATGGCTTAAATGTTTTAAAGGTTGCCCCTGAGAGTGCCATTAGATTTTATAGCTATGAGATGTTGAAGACCTTTATTGTAAGGGCCAAAGGGGAAGAGACACAGGCTGGTATTGGAGCCATGGGGCGGCTACTAGCTGGTGGTATTGCTGGTGCTATAGCTCAAACTGCAATATATCCCATGGATCTTGTTAAAACGCGACTACAAACCTATGTTTGTGAAAGCAGAGGAATTCCTAGTCTTGGAACTCTTTCAAAAGATATTTGGCTTCAGGAAGGACCCCGAGCATTTTATAGGGGATTGATTCCTTCTCTTCTTGGGATTATCCCTTACGCTGGTATAGATCTTGCTGCGTATGAAACCTTGAAGGATATGTCCAAGATGTATATTCTTCATGATGGAGAACCTGGCGCTCTAGTGCAATTAGGATGTGGGACTGTATCTGGAGCTCTTGGAGCAACATGCGTTTACCCACTACAGGTGGTTAGAACAAGAATGCAGGCTCAACGCTCTTATAAGGGAATGGCTGATGTATTCAGGAAAACCTTGGAAAATGAAGGCTTTAGGGGATTCTACAAAGGAATATTTCCTAACTTACTCAAGGTTGTGCCCTCAGCTAGCATCACCTACATGGTTTATGAGAGTATGAAAAAAAGTTTGCATTTGAATTGA 1422 0.4494 MKKASPVTMDHVLLASQETKEEREVRIRGLFEFFDRDNHGFLDYANIEAGLSALQIPSEYKYAKDLLNACDENKDGRVDFQEFKSYMDDKELDIYRIFQAIDVAHNGCILPEELLEALVKAGIKIDDEELARFVEHVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICMVDIGEQSVIPAGISKHIDATRYLIAGGVAGATSRTATAPLDRLKVVLQVQTARAHITPAIKAIWKEGGLLGFFRGNGLNVLKVAPESAIRFYSYEMLKTFIVRAKGEETQAGIGAMGRLLAGGIAGAIAQTAIYPMDLVKTRLQTYVCESRGIPSLGTLSKDIWLQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETLKDMSKMYILHDGEPGALVQLGCGTVSGALGATCVYPLQVVRTRMQAQRSYKGMADVFRKTLENEGFRGFYKGIFPNLLKVVPSASITYMVYESMKKSLHLN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0817 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 192 275 IPR018108 -
Pvu1g0817 473 SUPERFAMILY Mitochondrial carrier 190 464 IPR023395 -
Pvu1g0817 473 Gene3D Mitochondrial carrier domain 188 471 IPR023395 -
Pvu1g0817 473 SMART efh_1 62 90 IPR002048 GO:0005509
Pvu1g0817 473 SMART efh_1 93 121 IPR002048 GO:0005509
Pvu1g0817 473 SMART efh_1 26 54 IPR002048 GO:0005509
Pvu1g0817 473 SMART efh_1 129 157 IPR002048 GO:0005509
Pvu1g0817 473 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Pvu1g0817 473 Gene3D - 2 93 - -
Pvu1g0817 473 Pfam EF-hand domain pair 26 87 IPR002048 GO:0005509
Pvu1g0817 473 Pfam EF-hand domain pair 93 152 IPR002048 GO:0005509
Pvu1g0817 473 Pfam Mitochondrial carrier protein 289 375 IPR018108 -
Pvu1g0817 473 Pfam Mitochondrial carrier protein 191 278 IPR018108 -
Pvu1g0817 473 Pfam Mitochondrial carrier protein 388 471 IPR018108 -
Pvu1g0817 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 375 IPR018108 -
Pvu1g0817 473 ProSiteProfiles EF-hand calcium-binding domain profile. 58 93 IPR002048 GO:0005509
Pvu1g0817 473 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Pvu1g0817 473 SUPERFAMILY EF-hand 19 195 IPR011992 -
Pvu1g0817 473 PANTHER CALCIUM-BINDING MITOCHONDRIAL CARRIER PROTEIN SCAMC-1-B-LIKE 42 470 - -
Pvu1g0817 473 ProSiteProfiles Solute carrier (Solcar) repeat profile. 386 469 IPR018108 -
Pvu1g0817 473 Gene3D - 105 180 - -
Pvu1g0817 473 ProSitePatterns EF-hand calcium-binding domain. 71 83 IPR018247 -
Pvu1g0817 473 ProSiteProfiles EF-hand calcium-binding domain profile. 96 124 IPR002048 GO:0005509
Pvu1g0817 473 ProSiteProfiles EF-hand calcium-binding domain profile. 22 57 IPR002048 GO:0005509
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 197 210 IPR002067 GO:0055085
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 210 224 IPR002067 GO:0055085
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 250 270 IPR002067 GO:0055085
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 303 321 IPR002067 GO:0055085
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 348 366 IPR002067 GO:0055085
Pvu1g0817 473 PRINTS Mitochondrial carrier protein signature 395 417 IPR002067 GO:0055085
Pvu1g0817 473 PANTHER SOLUTE CARRIER FAMILY 25 42 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0817 Pvu-Chr1 11931427 11934932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0817 1 473 EF-hand Containing Proteins AT5G51050 71.308 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0817 K14684 - gmx:100775805 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0817 1 11931427 11934932 Pvu1g0817 1 11931427 11934932 ECH
Pvu1g0817 1 11931427 11934932 Pvu4g0743 4 10361547 10365040 PCT