Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0813 ATGGCGTTTGCAGTTAGGGCTTTAAGGGCAGTGAGAAAGAACTGCAGAGGAATGCCTCACCGTTCCTGTTTCTGCAAGCATGCACATTCAAATTCAAATTCAAATCCCCTTCTTTTCAAATTGCTTCAGGTTCCCACCTCACGCATCAAAACGACGCTGGATCAAGAAATGCCTTCTCTTCAAAGCTCACACCCTTCCTGGGACTTCCTTGTTACCTCTCTCTTCCCTTCTTCTTCAGACAAAGCTCGATTGGTTTTGGAATGGATTTTGGAGAAGATGCTGAAAGAAAATGCGAAAGACTGTGATATTTTCTCCAAACTCATCTTTCTATGTGGAAAGGTGAAAGACGTAGTGCTAGGAATGCGTGTGTTTAGTTCTATGGAGGCTATTGGAGTTAAACCCAATTCCATGGTTTTCAATTCCCTTATAAGTGTCTGTTTGTCTTCCTATAATGTTGTCACAGCACTTAGTTTATTTGAGATCATGGAGAGTTCAGAGAGCTATAAACCTGATTTTCATACTTATAATATGTTTATTTCAGCATTTTCCAAGTCAGGGAATGTTGATGCCATGTTAGCTTGGTACTCGGCAAAGAAGGCTGCTGCTGGATTTGATCCCGATCTTCAAATGTTTGAATCCCTTATATCTGGCTGTGTTAATTCTAGAACATTTGAGATTGCTGATGCAATTTTTGAGGAAATGATAACTTCTGGAATTGTACCTAGTGCATCAATACTGGAAAGTATGCTTAATGGGATTTGCAAGCAGAAGAGATTGGATCGAGCAGAGGAGTTTTTCAAGTTAGCGATTGATTCTGGATGGGAAGTAAACGAGAACATGGCTGATCAGCTAATAGCATTGTATCACCAACAAGGGAAAGTGGAAGAGATGGAGGCGCTACTTGAAACTGTGACAAATCCCTGTATAATTACTACCAGTGTTCTTGCGCGACTTCATTGTGGGATTGTGAAGAGTTATGCCATGTTAGATAGGTTGGATGATGTAGAGTTTGCTGTCGGTAGAATGCTTAAACAGGGGCTGTCATTCACAAGTGCAGATGATGTTGAAAAGGTCATCTGTTCATACTTTAGAAGGGAAGCTTATGATAGACTAGACATATTCTTGGAATGTTTAAAGAGTGGCTATGTGCTTAAGAAATCAACTTATAGCTTGTTAATATCTGGCTATAAACGAGCACACTTGCTTGAAAAAGTAGATAGAGTGATGAAAGACCTGAAATCAGCTGGTTTAACATGA 1257 0.4002 MAFAVRALRAVRKNCRGMPHRSCFCKHAHSNSNSNPLLFKLLQVPTSRIKTTLDQEMPSLQSSHPSWDFLVTSLFPSSSDKARLVLEWILEKMLKENAKDCDIFSKLIFLCGKVKDVVLGMRVFSSMEAIGVKPNSMVFNSLISVCLSSYNVVTALSLFEIMESSESYKPDFHTYNMFISAFSKSGNVDAMLAWYSAKKAAAGFDPDLQMFESLISGCVNSRTFEIADAIFEEMITSGIVPSASILESMLNGICKQKRLDRAEEFFKLAIDSGWEVNENMADQLIALYHQQGKVEEMEALLETVTNPCIITTSVLARLHCGIVKSYAMLDRLDDVEFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDIFLECLKSGYVLKKSTYSLLISGYKRAHLLEKVDRVMKDLKSAGLT* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0813 418 TIGRFAM PPR: pentatricopeptide repeat domain 173 195 IPR002885 -
Pvu1g0813 418 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Pvu1g0813 418 TIGRFAM PPR: pentatricopeptide repeat domain 248 278 IPR002885 -
Pvu1g0813 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 206 IPR002885 -
Pvu1g0813 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 418 IPR002885 -
Pvu1g0813 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Pvu1g0813 418 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 417 - -
Pvu1g0813 418 Pfam Pentatricopeptide repeat domain 201 243 IPR002885 -
Pvu1g0813 418 Pfam PPR repeat family 134 184 IPR002885 -
Pvu1g0813 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Pvu1g0813 418 Pfam PPR repeat 387 417 IPR002885 -
Pvu1g0813 418 Pfam PPR repeat 248 273 IPR002885 -
Pvu1g0813 418 Gene3D Tetratricopeptide repeat domain 77 321 IPR011990 GO:0005515
Pvu1g0813 418 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 417 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0813 80 417 Glycosyltransferase AT1G05670 22.874 3.83e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0813 - - gmx:100778561 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0813 1 11811076 11813579 Pvu1g0813 1 11811076 11813579 ECH