Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0698 ATGGCAAGTGTTGATGAGATCCACAAGGCACAGAGGACAGAAGGCCCAGCCACAATCTTGGCAATAGCCACTGCTACTCCTCTCAACTGTGTGGAACAAAGCACCTATTCTGACTACTATTTTCGTGTCACCAAGAGTGAACATAAGACAGAGCTCAAAAAAAAATTCGACCTCTTATGCAAAAAGTCAATGATTAAGAAGCGACACATGCAGTTGACAGAAGAGATGCTAAAGGAGCACCCCAACATTGGTGAGCACAATGCACCTTCATTGAATGCAAGGCAAGACTTGGTAGTGATGGAAGTAGCGAGGCTAGGAAAAGAGGCTGCAACAAAGGCCATGGAAGAATGGGGTGAACCAAAGTGTAAAGTCACCCACCTAATCTTTTGCACCACAAGTGGTAATGACATGCCTGGTGCTGACTTCCAACTCACCAAACTCTTGGGGCTTAACCTCAACGTGAAGCGTTACATGATATACCAACAAGGATGTTATGCCGGTGGAACTGCTCTTCGTTTGGCCAAAGACTTGGCTGAAAACAACAAAGGTGCTCGTGTGTTAGTAGTTTGCTCAGAAATCACCATATTCACCTTCCGTGGCCCCAGTGAGGCTCATGTTGATAACCTTGTGGGGCAAGCACTCTTTGGAGATGGTGCTTCTGCTGCCATTATTGGTTCGGACGTAATACCCAATGTTGAGAAGCCTTTGTTTCAACTAGTGTGGACTTCTCAAACAATAGTGCCAAATACTGAAGAGGTCATTGCATTGCACCTTCTTGAAGCTGGTCTGACATTCCATGTTCTCAAGGATCTTCCTGATCTTATTTCAAACAACATTGAGAATGTTCTTGTTGAAGCTTTTCAACCACTAAGCCTCTCTGATTATAACTCCATCTTTTGGATAGTGCATCCTGGTGGACGTGCAATTCTAGACCAAGTTGAGGAAAAGTTAGGTTTGAAGCCAGAAAAACTGCGAGCCAGTCGACATGTTCTTGCTGAGTATGGTAATATGGCAAGTGCTTGTGTGCTTTTCATAATGGATGAAATGAGGAACAAGTCCAAAGAAGCTGAACTTTCCACAACTGGAGAAGGTTTTGATTGGGGAGTACTGTTTGGTTTTGGACCAGGACTCACTATTGAGACTATTGTGCTGCGTAGTGTCATGCTGTAA 1170 0.4427 MASVDEIHKAQRTEGPATILAIATATPLNCVEQSTYSDYYFRVTKSEHKTELKKKFDLLCKKSMIKKRHMQLTEEMLKEHPNIGEHNAPSLNARQDLVVMEVARLGKEAATKAMEEWGEPKCKVTHLIFCTTSGNDMPGADFQLTKLLGLNLNVKRYMIYQQGCYAGGTALRLAKDLAENNKGARVLVVCSEITIFTFRGPSEAHVDNLVGQALFGDGASAAIIGSDVIPNVEKPLFQLVWTSQTIVPNTEEVIALHLLEAGLTFHVLKDLPDLISNNIENVLVEAFQPLSLSDYNSIFWIVHPGGRAILDQVEEKLGLKPEKLRASRHVLAEYGNMASACVLFIMDEMRNKSKEAELSTTGEGFDWGVLFGFGPGLTIETIVLRSVML* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0698 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Pvu1g0698 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 3 388 IPR011141 GO:0009058|GO:0016747
Pvu1g0698 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 227 IPR001099 -
Pvu1g0698 389 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Pvu1g0698 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Pvu1g0698 389 PANTHER CHALCONE SYNTHASE 3 3 388 - -
Pvu1g0698 389 CDD CHS_like 16 384 - -
Pvu1g0698 389 Gene3D - 236 389 IPR016039 GO:0016746
Pvu1g0698 389 SUPERFAMILY Thiolase-like 1 227 IPR016039 GO:0016746
Pvu1g0698 389 Gene3D - 1 235 IPR016039 GO:0016746
Pvu1g0698 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0698 Pvu-Chr1 8792554 8793851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0698 121 387 Miscellaneous Gene Families AT3G52160 25.090 2.99e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0698 K00660 - gmx:100792581 590.882