LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0621	ATGTCTCGCGTTTATGTTGGTAACTTGGATTCACGAGTGACCGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTCGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTGGATGGCAAGAACGGTTGGAGGGTTGAACTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGTGGTGGTCGCTCTGGTGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCTTACGTGGTGGATCAGGAAGACGTCGGAGTCGCAGCCCACCCCGATTTCGTAGGAGCCCTAGCTATGGACGAAGTCCTCGTGGACGATCTCCTAGGCGCCGCAGTTTATCGCCCCGTGGACGAAGCTACAGCAGGTCACCTCCATATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAACGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGA	531	0.5122	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS*	177

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0621	176	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Pvu1g0621	176	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Pvu1g0621	176	SUPERFAMILY	RNA-binding domain, RBD	3	85	IPR035979	GO:0003676
	Pvu1g0621	176	SMART	c2hcfinal6	90	106	IPR001878	GO:0003676\|GO:0008270
	Pvu1g0621	176	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Pvu1g0621	176	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	168	-	-
	Pvu1g0621	176	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	168	-	-
	Pvu1g0621	176	Pfam	Zinc knuckle	90	105	IPR001878	GO:0003676\|GO:0008270
	Pvu1g0621	176	SUPERFAMILY	Retrovirus zinc finger-like domains	80	106	IPR036875	GO:0003676\|GO:0008270
	Pvu1g0621	176	Gene3D	-	2	69	IPR012677	-
	Pvu1g0621	176	ProSiteProfiles	Zinc finger CCHC-type profile.	90	105	IPR001878	GO:0003676\|GO:0008270
	Pvu1g0621	176	CDD	RRM_SRSF3_like	3	71	-	-
	Pvu1g0621	176	Gene3D	-	78	140	-	-
	Pvu1g0621	176	MobiDBLite	consensus disorder prediction	95	110	-	-
	Pvu1g0621	176	MobiDBLite	consensus disorder prediction	66	176	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0621	Pvu-Chr1	7342877	7346075	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0621	K12896		-	gmx:100796961	236.498

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0621	1	7342877	7346075	Pvu1g0621	1	7342877	7346075	ECH