Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0620 ATGTATGAACCAAAAAACATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCACATGTCACTACCAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAACTAGATTATTGCTCCACTTTCAGGAATTTGAAGTCATGTATTTCATCACCAAACTTCAAATTTATCAAGGGTGATATAGCTACCGCAGATATTGTGAATCATGTTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTACAATAATATCTACGGCACTCATGTGCTTCTTGAAGCTTGCAGGGTCACTGATTGTGTCAAAAGGTTCATTCATGTTAGCACTGATGAAGTCTATGGTGAAACAGACTTAGAGGATGATATTGGAAACCATGAGGCGTCTCGGCTTCTACCCACCAATCCTTATTCTGCAACAAAAGCAGGCGCAGAAATGTTGGTCATGGCTTATCACAGGTCTTATGGTCTTCCAGTTATAACTTCCAGAGGCAATAATGTGTATGGTCCCAACCAATACCCAGAAAAGCTTGTTCCTAAGTTCATCCTTCTTGCCATGAAGGGTGAGAAATTGCCAATCCATGGAGATGGATCGAATGTGAGGAGCTACCTCCACTGTGATGATGTGTCAGAAGCTTTTGATGTCATAGTCCACAAAGGAGAGATTGGCCAAATTTACAACATTGGCACAAAGAAAGAAAGGAGTGTGTTAGATGTTGCAGAGGAAATATGCAAACTCTTTAAATTGAATCCTAAAGATGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTTGATGATCAAAAGCTGAAACTACTTGGTTGGGAGGAGAGAATTCCCTGGGAGGAAGGACTGAAGAGGACAATTGACTGGTACCAAAAGAATCCTGATTGGTGGGGTGATGTTTCTCCTGCTTTAAACCCTCATCCACGTTTCTCAGCCATCAATCTCTCTGATGAAGCTCAATGGTCCTTTCAATATGGATACTCTAGGCTTGCAAGGTCATATACTGAAGTTGGAAGAAGCAATTCAGGATACAAGTTTTTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAAGACAGAATTGATTGGGAATATGGAAGAGGAAGATTGCAAGATAGGAAATCACTTGAGGAGGATATAAGGAGGGTAAAGCCAACCCATGTGTTGAGTGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACTATAAGAACCAATGTTGTTGGTACTTTAACACTGGCTGATGTTTGCAAGGAGCAAAACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGAGCATCCCCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACAAGCCAAATTTCATAGGCTCCTACTATTCAAAGACCAAAGCCATGGTGGAGGACCTTCTAAGAAATTATGAAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTACCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAATAAAGTGGTAAACATACCTAATAGCATGACAGTGTTGGATGAACTCTTACCCATATCTATTGAAATGGCCAAGAGGAACCTAAGAGGGATTTGGAACTTCACCAACCCAGGGGTCATTAGCCACAACCAGATATTAGAATTGTACAGGGATTACATAGATCCACAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCAAAGCTCAAAAATGAGTTCCCAGGATTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGTGCCTAACAAGAAAACTTGA 1968 0.3999 MYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKLDYCSTFRNLKSCISSPNFKFIKGDIATADIVNHVLIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTDCVKRFIHVSTDEVYGETDLEDDIGNHEASRLLPTNPYSATKAGAEMLVMAYHRSYGLPVITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCDDVSEAFDVIVHKGEIGQIYNIGTKKERSVLDVAEEICKLFKLNPKDVIEFVQDRPFNDKRYFLDDQKLKLLGWEERIPWEEGLKRTIDWYQKNPDWWGDVSPALNPHPRFSAINLSDEAQWSFQYGYSRLARSYTEVGRSNSGYKFLIYGRTGWIGGLLGKLCDEDRIDWEYGRGRLQDRKSLEEDIRRVKPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEQNLYMMNFATGCIFEYDKEHPLGSGIGFKEEDKPNFIGSYYSKTKAMVEDLLRNYENVCTLRVRMPISSDLTNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKNEFPGLLSIKDSIIKFVFVPNKKT* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0620 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 633 IPR036291 -
Pvu1g0620 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Pvu1g0620 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Pvu1g0620 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Pvu1g0620 655 Pfam NAD dependent epimerase/dehydratase family 401 538 IPR001509 -
Pvu1g0620 655 Gene3D - 7 311 - -
Pvu1g0620 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
Pvu1g0620 655 Gene3D - 363 655 - -
Pvu1g0620 655 Gene3D - 198 320 - -
Pvu1g0620 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
Pvu1g0620 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 327 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0620 Pvu-Chr1 7317633 7319789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0620 6 317 Miscellaneous Gene Families AT1G02000 25.075 1.62e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0620 K12450 - gmx:100776241 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0620 1 7317633 7319789 Pvu1g0620 1 7317633 7319789 ECH