Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0614 ATGGGACTCACGCTAAACCCCAACAGACTCAGATATTGCGTGCCTCTTCATACCCCTCATTCCTTCACCAATTCACCTGTTTCTCTTTCTCCATCTTCTGCTGGAGTCAAGGAGACTTGTTTCAACTGCACGAAGTTGTCTTTGCCGACAACATCTTATGAGGAAGGAGAAGCTTTGCAGAAAGATTTTGGAAGGGTTTATGCATTTTCTGCTTTGGATACCTTGGAAAATGAGTCATTAGGAAGAGAAGAAACCGGGGTAAATAAAGGGAAGAGGTCACTGAGTGGTGTACATGAAATGTTTGATGATACCCAAATGCCTTTTGGAGAGGTATCTAGTGTGTCTAAGAAGTTTGAGTCATTCACGCCACAGCATTTCCGTTTGTTAATGAAGAACCTTGATGTTTTAGAAGAGGCTTTTGCCGATTCAGAAGCACTGAGGTTGGAAAAGGCTATTAGATTGCAACTAGAAAAGCTTGGTGCTCTCGAGATATTCAATGTTTATCTATCACTTGTGACAGACTATGCTGATAAAGTACATAACAAGGGCAAATGTGTTGTCCCCTCTAGCAAGAAAAAGCAAAATAAAACTAGAAGAAAGAGAGAAATTGGTGTCACAGCAGTTTCATCACAGTCATTGACTTTAAAAGTTAATCAGGAAGATCTATTAGGATTCTCAGTTTCAGTTGTGAAAAGAGCAACAAATAGTAAAAATAAAAGAATGATGGTTGCTAAAAGGGAGGCAGAGATGGCAAAAGGTGTAAAGGTGCTAGCTGAGTTAGAGAAAATTAGGACAGCTTTAGAAGAGGATACCAAGCGAGTAGTGTGCTTGAATCACTGGGCCGAAGCATCTGGAGTTGATGAGAAGGTGCTACAGCAGCTATTGCATCATGGCTATTATTGTCGGGATGAGCTCGTACGGAGTTCTCGTTCCTTAGTTCTATACCTTGCCAGAAAATACAGGGGTATGGGAATAGCTTTGGATGATTTACTTCAGGCAGGATATGTAGGTGTTCTCCAAGGAGCTGAGAGATTTGACAGTACAAGGGGATACAAATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATTTTAAGAGTGGTGGAACGATATTCTCGAGGAGTCATAATTCCTTGGTCATTAAACAGGGCAATAAAGCAAATCCAGAAAGCTCGAAAAGTCCTGAAAAGTACACACAAGAAAAGCCCAGATGATTGTGAAATTGCAAAGATGACAGGTCTTTCACTAGATAAAATCAAATCAGCTAGCAATTGTCTGAGAATAGTTGCTTCAATTGATCAGAAGGTGGGGAATTTTAGCATAGAATATAATGAACTTCTTCCCGATACAACAATCGAGAGCCCTGAAAATGGTGTCCTGAAGCAACATATGAAAAAAGACGTACATGATCTTCTGAAAGGCTTGAACTCAAGGGAAAGGCAAATATTAAGCCTACGCTTTGGCCTTATTGATAACCAGCCCAAGTCTCTACAGGATATAGGGACGCTTTTCAAAGTTAGCAAAGAGAGGATAAGAAAAATAGAGAAAATTGCTCTAACAAAGTTAAGGAATGAGGCAACCACCTCAGATTTACATTATTATTTGGATCTGTAG 1617 0.4001 MGLTLNPNRLRYCVPLHTPHSFTNSPVSLSPSSAGVKETCFNCTKLSLPTTSYEEGEALQKDFGRVYAFSALDTLENESLGREETGVNKGKRSLSGVHEMFDDTQMPFGEVSSVSKKFESFTPQHFRLLMKNLDVLEEAFADSEALRLEKAIRLQLEKLGALEIFNVYLSLVTDYADKVHNKGKCVVPSSKKKQNKTRRKREIGVTAVSSQSLTLKVNQEDLLGFSVSVVKRATNSKNKRMMVAKREAEMAKGVKVLAELEKIRTALEEDTKRVVCLNHWAEASGVDEKVLQQLLHHGYYCRDELVRSSRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVERYSRGVIIPWSLNRAIKQIQKARKVLKSTHKKSPDDCEIAKMTGLSLDKIKSASNCLRIVASIDQKVGNFSIEYNELLPDTTIESPENGVLKQHMKKDVHDLLKGLNSRERQILSLRFGLIDNQPKSLQDIGTLFKVSKERIRKIEKIALTKLRNEATTSDLHYYLDL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0614 538 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 441 529 IPR013324 -
Pvu1g0614 538 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 378 439 IPR013324 -
Pvu1g0614 538 PRINTS Major sigma-70 factor signature 329 342 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PRINTS Major sigma-70 factor signature 353 361 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PRINTS Major sigma-70 factor signature 476 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PRINTS Major sigma-70 factor signature 497 512 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PRINTS Major sigma-70 factor signature 512 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 Coils Coil 382 402 - -
Pvu1g0614 538 Pfam Sigma-70, region 4 472 525 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 Pfam Sigma-70 region 2 305 373 IPR007627 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 14 537 - -
Pvu1g0614 538 CDD Sigma70_r4 466 524 - -
Pvu1g0614 538 Gene3D - 377 529 - -
Pvu1g0614 538 Pfam Sigma-70 region 3 385 459 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 Gene3D - 190 374 - -
Pvu1g0614 538 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 241 374 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 302 526 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pvu1g0614 538 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 14 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0614 Pvu-Chr1 7172668 7177856 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0614 K03093 - gmx:100802522 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0614 1 7172668 7177856 Pvu1g0614 1 7172668 7177856 ECH