Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0611 ATGCTTCAATTTCACATTAACATTTTCTCTCCCTTCACCGCCACACTCCACTCCAACAAACTCCATTCCTCGCGTGTCCGTTCCTCTTCCGCTCCGGCACGCCGTCGTTTAGTAACCACCGCAACTCCGAGCGACGCCAATCTCCGGCATCTCACTTCGCGCATTGTTCAACTCACCCGACGGAAACAGCTTCGGCAGATTTTGGATGAGATCGAGGTTGCGAAAAGGCAGTTCGGGAAGCTGAATACGATTGTGATGAACGCGGTGATGGAGGCTTGTGTCCGTTGCGGTGATATCGATTCAGCGATTAGGATATTCGTAGAGATGAAAAAGGGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACACTTTTGAAGGGGTTAGGTGAGGCACGAAGAGTCGATGAGGCTTTTGAAATGCTTGAAACTGTGGAAAATGGCACTGCTATGGGAAGTCCAAACTTGTCAGCTCCATTGATATATGGTCTGCTAAATGCCTTAATCAAAGCAGGAGACTTGCGTCGTGCACATGGTCTCCTTGCCCGTTATGGTTTTGTGTTTCGAGAAGATGGCAAATTTTCAGTCTCAGTATACAACATACTAATTAAGGGCTACATAAACTCAGGCTATCCACACACTGCAATAAACATGCTGAATGAAATTCTACGTCAAGGTATAATGCCGGACCGGCTCACATATAACACACTAATTTTAGCATGTGTTGAGAGTGAAAAGTTGGATACTGCAATGCAATTTTTTGAGGAAATGAAGGGCAAAGCGCAGAAATTTGTCAATGATGATATGTTTCCAGATATTGTTACATATACGACATTGCTTAAGGGTTTTGGGAAGGCAAAGGATCTTGCTTCAGTTCTGAAAATAGTTCTGGAAATGAAATCTCGTTGGGAATTATACATCGATAGAACTGCTTACACTGCAATAGTTGATGCTTTTCTAACATGTGGCTCAGTTAAGGGTGCTCTTTGTATTTTTGGAGAAATATTGAAACAGGCTGGTTTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGGGCCTTCGCTTCTCTAGGAGATTATGATGTAGTTAAAGTTTTACATAAACGGATTTGGCCAGATTCATCAGGAACCATATTATTAGCAGCTCAAGAAGAGGCTGATCACCTTCTAATGGAAGCAGCACTGAATGCTGGCCAGATTAATGTTGCCATTAAAACACTTGCTGAGATTGTTTCAAGATGGAAGGGCTTATCCTGGACAAGTCGTGGGGGCATGGTAGCTTATCGTATTGAGGCCATGTTGGGATTCTCAAAGTCTTTGTTCAGTCCCTACTTACTTCCTCAGGTTTCACCTTATGAACCAATTGAGAACTATATGATACGATTTGATGCAACACGGCCACTACAAGGTACCATAAAGCTAAGGAAGGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTGTTGTAGATGAGTGGGGTAGTTGTATAGGGCTGCTACACCGTGAAGACTGCAACCAGTTGGATGCACCACTTTCAACAATAATGAGAAGCCCTCCTCCCAGTGTTACAAGTTCAACATCTGTTGGTCATGTAGTTGATTTAATTTTAGAGAAGCGATACCCGATGGTTATCATTGTAAATTACACAAACTCATATGCTACTCCTCCATATAGCTCTAGAGCAGTTGGAGTTTTTACACCAGAACAATTAAGTAGGTTTATCAAGCCGGTATCTCGAGTAAAATGGACAGACCTTTGTGAAAGGTGTGAAAGGTAA 1794 0.432 MLQFHINIFSPFTATLHSNKLHSSRVRSSSAPARRRLVTTATPSDANLRHLTSRIVQLTRRKQLRQILDEIEVAKRQFGKLNTIVMNAVMEACVRCGDIDSAIRIFVEMKKGDGCGVDTVTYATLLKGLGEARRVDEAFEMLETVENGTAMGSPNLSAPLIYGLLNALIKAGDLRRAHGLLARYGFVFREDGKFSVSVYNILIKGYINSGYPHTAINMLNEILRQGIMPDRLTYNTLILACVESEKLDTAMQFFEEMKGKAQKFVNDDMFPDIVTYTTLLKGFGKAKDLASVLKIVLEMKSRWELYIDRTAYTAIVDAFLTCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFASLGDYDVVKVLHKRIWPDSSGTILLAAQEEADHLLMEAALNAGQINVAIKTLAEIVSRWKGLSWTSRGGMVAYRIEAMLGFSKSLFSPYLLPQVSPYEPIENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPVVDEWGSCIGLLHREDCNQLDAPLSTIMRSPPPSVTSSTSVGHVVDLILEKRYPMVIIVNYTNSYATPPYSSRAVGVFTPEQLSRFIKPVSRVKWTDLCERCER* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0611 597 Pfam PPR repeat family 82 129 IPR002885 -
Pvu1g0611 597 Pfam PPR repeat family 196 241 IPR002885 -
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Pvu1g0611 597 PANTHER OS09G0431600 PROTEIN 15 587 IPR044781 -
Pvu1g0611 597 TIGRFAM PPR: pentatricopeptide repeat domain 274 302 IPR002885 -
Pvu1g0611 597 TIGRFAM PPR: pentatricopeptide repeat domain 233 258 IPR002885 -
Pvu1g0611 597 TIGRFAM PPR: pentatricopeptide repeat domain 198 230 IPR002885 -
Pvu1g0611 597 TIGRFAM PPR: pentatricopeptide repeat domain 120 143 IPR002885 -
Pvu1g0611 597 TIGRFAM PPR: pentatricopeptide repeat domain 86 118 IPR002885 -
Pvu1g0611 597 CDD CBS_pair_SF 476 553 - -
Pvu1g0611 597 Pfam Pentatricopeptide repeat domain 262 301 IPR002885 -
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 343 IPR002885 -
Pvu1g0611 597 Gene3D Tetratricopeptide repeat domain 161 265 IPR011990 GO:0005515
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Pvu1g0611 597 ProSiteProfiles CBS domain profile. 521 591 IPR000644 -
Pvu1g0611 597 Gene3D - 457 578 IPR046342 -
Pvu1g0611 597 Gene3D Tetratricopeptide repeat domain 38 149 IPR011990 GO:0005515
Pvu1g0611 597 SUPERFAMILY CBS-domain pair 471 556 IPR046342 -
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Pvu1g0611 597 Gene3D Tetratricopeptide repeat domain 266 439 IPR011990 GO:0005515
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Pvu1g0611 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0611 Pvu-Chr1 7107835 7117449 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0611 164 465 Miscellaneous Gene Families AT4G11690 25.407 1.18e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0611 - - gmx:100813146 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0611 1 7107835 7117449 Pvu1g0611 1 7107835 7117449 ECH