Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0587 ATGGCTCCTCCCAGAGGTCGTGGTGGTGGAAGTTACAGTGGTGGTGGAAGTTTCAGTGGTGGTGGTGGTAGTGGAGGTTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGGGGCGGCGGAGGTAGAGGAGGAGATAGGGGTACGCCTTTTAAAGCCAGAGGTGGTGGGAGAGGAGGCAGGGGAGGTGGCCGTGGAGGAGGCAGAGGTGGTGGCCGTGGTGGAGGAATGAAGGGAGGGAGTAGGGTCGTGGTTCAACCACATAGACATGAGGGTATTTTTATTGCCAAGGGTAAAGAAGATGCCCTTGTCACTAAGAATCTTGTTCCCGGTGAAGCTGTTTACAATGAGAAAAGGATTACTGTTCAGAACGAAGATAGTTCCAAAGTTGAGTACAGAATTTGGAATCCTTTCCGCTCGAAGTTGGCTGCTGCTATCCTTGGTGGAGTTGATAACATATGGATTAAACCTGGTGCTAGAGTCCTTTACTTAGGAGCTGCTTCTGGTACAACTGTTTCTCATGTTTCTGATATTGTTGGCCCAACAGGAGTTGTCTATGCAGTTGAATTTTCTCATAGAAGTGGACGTGATTTGGTCAATATGGCAAAGAAGCGTACTAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCAAAGTACAGGATGTTAGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCCCAGCCTGATCAGGCCAGGATTTTGGGGCTCAATGCTTCATATTATCTCAAAACGGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCTACCGTTCCTGCGGAGGCTGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCAGATCAATTCAAGCCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCTTGTGTTGTTGGTGGATACAGAATGCCCAAGAAGAAGAAAGATACTGCGTAG 966 0.471 MAPPRGRGGGSYSGGGSFSGGGGSGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGRGGGRGGGRGGGRGGGMKGGSRVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDSSKVEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKTGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDTA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0587 321 Gene3D Phosphorylase Kinase; domain 1 80 135 - -
Pvu1g0587 321 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 99 312 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 103 122 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 131 150 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 158 179 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 183 200 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 208 237 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 238 267 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PRINTS Fibrillarin signature 290 311 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 83 309 IPR029063 -
Pvu1g0587 321 ProSitePatterns Fibrillarin signature. 183 197 IPR020813 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PANTHER BNAA03G47570D PROTEIN 12 319 - -
Pvu1g0587 321 SMART Fibrillarin_2 85 313 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 12 319 - -
Pvu1g0587 321 Gene3D Vaccinia Virus protein VP39 136 313 IPR029063 -
Pvu1g0587 321 Pfam Fibrillarin 85 312 IPR000692 GO:0003723|GO:0006364|GO:0008168
Pvu1g0587 321 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0587 Pvu-Chr1 6703472 6706756 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0587 K14563 - gmx:100788688 501.516