Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0580 ATGGATGAGCAATTCATACTTAGAGTTCCACCGAATGTGGCAGAGCGGATAGAGCGCCTTTTGAATGAAACTGATCCTTCTTCATCTGAAGACAAGTCATTAGATTTGTCATTTAATGAAGATGGAAGAAGTGGTACGTTTATGATTGGGAATGAACACTTCCCAGCTTCTCTATTGGACCTTCCTTGTGTTGTTGAATCCTACAAGACATATGATGATAACTCTTTGATTAAGGCTGCTGATATTGGTCAGATGATTATGGTTCGGGAATCTGGTGATGCTGCTCCAGATGTAATTGAGTACAGGCATGGCCTCACCCCTCCCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAGCCTGATCTTAATCCTGAGCTTGTATCTCGTGTTGAGAAAGATCTCCTCAAAATCATGGCTGGAGGAACAGCCGAAAATCATGATGCAGAAGCCGCTGAACAAGAAGTGGAGGAGAATGCCCGAGGTGCTAATAGAAAACCTGCACCTAAGCCTGCACCAAAACATGATGTTCCAGAGAATCTTACAAATGCAGGGGAGCCTGACAGGAGTGATTCTGAGGAATCTGATGACTCAGTCTGA 600 0.4467 MDEQFILRVPPNVAERIERLLNETDPSSSEDKSLDLSFNEDGRSGTFMIGNEHFPASLLDLPCVVESYKTYDDNSLIKAADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRREPDLNPELVSRVEKDLLKIMAGGTAENHDAEAAEQEVEENARGANRKPAPKPAPKHDVPENLTNAGEPDRSDSEESDDSV* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0580 199 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED 1 198 IPR037817 GO:0005669
Pvu1g0580 199 Coils Coil 146 166 - -
Pvu1g0580 199 MobiDBLite consensus disorder prediction 143 199 - -
Pvu1g0580 199 MobiDBLite consensus disorder prediction 148 173 - -
Pvu1g0580 199 PANTHER TAF7 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR 1 198 - -
Pvu1g0580 199 Pfam TAFII55 protein conserved region 2 139 IPR006751 GO:0005669|GO:0006367
Pvu1g0580 199 SMART TAFII55_N_2 1 146 IPR006751 GO:0005669|GO:0006367
Pvu1g0580 199 CDD TAF7 2 145 IPR006751 GO:0005669|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0580 Pvu-Chr1 6632286 6635037 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0580 K03132 - gmx:100782843 322.398