Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu1g0566 | ATGCTCTCTCGTTCTCTCAAACTCCCTTACTCACTCTTCTCCCTCCGTTCATTTCTCGTTCCAAACCCAATTCCTAACCTAAACCCTTCAATCCGACCCTCCCGACACCGTCTCTTCTCTTCTTCATGGCTATCCGAACCGGGAAATCCAATCATCCAATGGCCATCACTACCCACCCCAAACCCTCCTCCCCATCCCAACCCCAAGCCTACACCCGACCCTACCTCTCCAAACCTAAACGCATTCTCCCTCATTTCCAACCTCTTCACGGACCCTTCCGTCTCGCCCGGTCCGGTCCTCCACGCCAAACTCGACCGCTCTGCCATCGAACCGGACCCGGCTCTCCTTCTCGCCCTCTTCGACCGCTTCGGCTCGTCCCCCAAGCTCCTACACTCGCTCTTCCTCTGGGCCCAGACCCGACCCGGCTTCAGGCCCGGCCCGAAGCTGTTTGACGCCGTCGTCAATGCTCTCGCGAAGGCAAAGGAGTTTGACGCCGCGTGGAAACTCGTTCTCGATAACGTCGATGGAGATGGGGAAGAGGAAAACGAAAGCTTGGTTTCTGTTGGGACCTTTGCCATCATGATTCGACGCTATGCGCGTGCAGGTATGTCCAAACTTGCAATTAGAACTTATGAATTTGCTAGAAATAACAAGTCAATTGTGGATTCTGGCTCAGAAATGAGTTTATTTGAGATATTGATGGATTCACTTTGTAAAGAAGGATCTGTGAGGGAAGCATCAGAGTATTTCCTTTGGAGAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTTTATAACATAATGTTGAATGGATGGTTTCGATCAAGGAAACTCAAGCAGGGCGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGGATGCGTCGTGTTGAGAAAGCACTTGAAATGGTTGGTGATATGACCAAAGAAGGAATTGCACCAAATGTAATTGTATACAACCCAATAATTGATGCACTAGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGATTTCATATTTTGGAAATTGGCCCTACTGATTCAACATACAATTCTCTCATAAAAGGGTATTGTAAGGCAGCAGATCTTGCAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCATCCCAAGTCCCACTACCTATAACTACTTTTTTCGGTACTTTTCAAGATGTGGAAAAATTGAGGAGGGGATGAACCTGTATAGGAAGATGATTGAGTCTGGTTATACCCCAGATCGGTTAACATACCATCTTTTGGTGAAGATGTTATGTGAAGAGGGGAAGTTAGACTTGGCAGTTCAAGTTAGCAAGGAAATGAGGCATAATGGATATGACATGGACTTGGCTACCAGTACCATGTTAATTCATTTGCTTTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCTGAATTTGAGGACATGATAAGAAGGGGTATAGTTCCTCAGTATCTCACTTTCCAGGGAATGAAAGCTGAGTTAAAGAAACAAGGTATGACTGAAATGGCTCAAAAGCTTTGTAAGTTGATGTCTTCGGTTCCCTATTCTGACAACTTGCCAAATACTTATGGTGGAGACAGAGAAGATGCTCTTACACGAAGAAAATCTATAATTCGGAAAGCCAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGATCCAAGTGAACTTCGTCAGTGGAAAAATTCATCAGAAAATGCTGTCTCAAGCGCAAATTCTATGATAGAGGATATTGAGGGAAAATGA | 1821 | 0.4509 | MLSRSLKLPYSLFSLRSFLVPNPIPNLNPSIRPSRHRLFSSSWLSEPGNPIIQWPSLPTPNPPPHPNPKPTPDPTSPNLNAFSLISNLFTDPSVSPGPVLHAKLDRSAIEPDPALLLALFDRFGSSPKLLHSLFLWAQTRPGFRPGPKLFDAVVNALAKAKEFDAAWKLVLDNVDGDGEEENESLVSVGTFAIMIRRYARAGMSKLAIRTYEFARNNKSIVDSGSEMSLFEILMDSLCKEGSVREASEYFLWRKELDLSWVPSIRVYNIMLNGWFRSRKLKQGERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTKEGIAPNVIVYNPIIDALAEAGRFKEALGMLERFHILEIGPTDSTYNSLIKGYCKAADLAGASKILKMMISRGFIPSPTTYNYFFRYFSRCGKIEEGMNLYRKMIESGYTPDRLTYHLLVKMLCEEGKLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQGMKAELKKQGMTEMAQKLCKLMSSVPYSDNLPNTYGGDREDALTRRKSIIRKAKAFSDMLKDCKDPSELRQWKNSSENAVSSANSMIEDIEGK* | 607 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu1g0566 | 606 | Pfam | PPR repeat | 434 | 466 | IPR002885 | - | |
| Pvu1g0566 | 606 | Pfam | PPR repeat | 329 | 358 | IPR002885 | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 438 | 472 | IPR002885 | - | |
| Pvu1g0566 | 606 | SUPERFAMILY | HCP-like | 262 | 470 | - | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 406 | 438 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 364 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 478 | 507 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 371 | 403 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 441 | 473 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 334 | IPR002885 | - | |
| Pvu1g0566 | 606 | TIGRFAM | PPR: pentatricopeptide repeat domain | 266 | 298 | IPR002885 | - | |
| Pvu1g0566 | 606 | Pfam | PPR repeat | 476 | 505 | IPR002885 | - | |
| Pvu1g0566 | 606 | Pfam | PPR repeat | 232 | 250 | IPR002885 | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - | |
| Pvu1g0566 | 606 | PANTHER | LEAF PROTEIN-LIKE | 94 | 604 | - | - | |
| Pvu1g0566 | 606 | MobiDBLite | consensus disorder prediction | 580 | 606 | - | - | |
| Pvu1g0566 | 606 | MobiDBLite | consensus disorder prediction | 54 | 77 | - | - | |
| Pvu1g0566 | 606 | Gene3D | Tetratricopeptide repeat domain | 99 | 252 | IPR011990 | GO:0005515 | |
| Pvu1g0566 | 606 | Gene3D | Tetratricopeptide repeat domain | 253 | 324 | IPR011990 | GO:0005515 | |
| Pvu1g0566 | 606 | Gene3D | Tetratricopeptide repeat domain | 469 | 538 | IPR011990 | GO:0005515 | |
| Pvu1g0566 | 606 | Gene3D | Tetratricopeptide repeat domain | 325 | 393 | IPR011990 | GO:0005515 | |
| Pvu1g0566 | 606 | Gene3D | Tetratricopeptide repeat domain | 394 | 468 | IPR011990 | GO:0005515 | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Pvu1g0566 | 606 | MobiDBLite | consensus disorder prediction | 54 | 75 | - | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 263 | 297 | IPR002885 | - | |
| Pvu1g0566 | 606 | Pfam | PPR repeat family | 370 | 412 | IPR002885 | - | |
| Pvu1g0566 | 606 | Pfam | PPR repeat family | 262 | 311 | IPR002885 | - | |
| Pvu1g0566 | 606 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 94 | 604 | - | - | |
| Pvu1g0566 | 606 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu1g0566 | 119 | 535 | Miscellaneous Gene Families | AT4G11690 | 25.532 | 6.29e-45 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu1g0566 | - | - | gmx:100793484 | 997.267 |