Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0563 ATGGCCACTACTCTCTCTGAAGCCTATAGAGACCACCCTCTCCATCTCCATCATATCATCCCCTTAGACTTTTCTTCACTTAGAACCTTACCTGATTCCCATGCATGGCCTCAAACTGAAGATGGTCATCATCATGATGATCATGATGATGATGATCATGGAGGTGGATCATGCATACCCATCATTGACCTCATGGATCCTAATGCCATGGAACTCATAGGCCTTGCTTGTGAGAACTGGGGTGCCTTCCAACTGAAGAACCATGGCATACCCTTGAATGTTGTTGAAGAGGTTGAAAAAGAGGCAAAGAAGCTCTTTGCCCTCCCCGCCGACCGGAAGTTGAAGGCCCTACGATCCGCCGCTGGGGCCACCGGCTACGGCCGAGCACGGATATCATCCTTCTTCCCCAAACACATGTGGCATGAAGGATTCACCATCATGGGGTCTCCATGCGATGATGCCAAAAAGATTTGGCCTAATGACCATACACGGTTTTGCAACATAATGGAGAATTACCAGAAGCAAATGAAGATGCTAGCAGAGAAGCTAACCCAGATGATGTTGAGGTTGTTGGGGATCTGTGAGGATGAAAAGGGGTGGGTTGGTTCAAGGAACCTGTGTGAAGCTGTTCAGCTGAACTTCTACCCTTGTTGCCCAGAGCCTAACAGAGCCATGGGTCTTGCCCCTCACACAGACACTTCCCTCTTGACAATCCTCCACCAAAGCCAAACCAATGGACTCCAAATCTTCAAGGAGGGTGCAGGGTGGGTCCCTGTGCACCCTCACCCTAACACCCTTGTTGTTCACACCGGTGACATTCTCCACATCTTGTCCAACTCAAGGTTCCCTTGTGCACTGCATCGTGTCATGGTGAACAGTGAAAGGCAAAGATACTCTGTGGCCTATTTCTATGGCCCCCCTTTGGATTATGTACTTTCTCCATTGCTTCTCAGCTCCTTCCCTCGTTTTCGTTCTCTGTCTGTCAAGGAGTATATTGCCATCAAGGCCAAGAACCTTGGTCAAGCATTGTCTTTGATTACCACCATTCAAAACTAA 1056 0.4867 MATTLSEAYRDHPLHLHHIIPLDFSSLRTLPDSHAWPQTEDGHHHDDHDDDDHGGGSCIPIIDLMDPNAMELIGLACENWGAFQLKNHGIPLNVVEEVEKEAKKLFALPADRKLKALRSAAGATGYGRARISSFFPKHMWHEGFTIMGSPCDDAKKIWPNDHTRFCNIMENYQKQMKMLAEKLTQMMLRLLGICEDEKGWVGSRNLCEAVQLNFYPCCPEPNRAMGLAPHTDTSLLTILHQSQTNGLQIFKEGAGWVPVHPHPNTLVVHTGDILHILSNSRFPCALHRVMVNSERQRYSVAYFYGPPLDYVLSPLLLSSFPRFRSLSVKEYIAIKAKNLGQALSLITTIQN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0563 351 Pfam 2OG-Fe(II) oxygenase superfamily 209 306 IPR044861 -
Pvu1g0563 351 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 342 - -
Pvu1g0563 351 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 159 IPR026992 -
Pvu1g0563 351 Gene3D - 17 340 IPR027443 -
Pvu1g0563 351 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 342 - -
Pvu1g0563 351 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 306 IPR005123 -
Pvu1g0563 351 SUPERFAMILY Clavaminate synthase-like 17 339 - -
Pvu1g0563 351 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0563 Pvu-Chr1 6377952 6380010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0563 59 331 Glycosyltransferase AT5G59530 30.405 5.00e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0563 K04124 - gmx:100780857 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0563 1 6377952 6380010 Pvu9g0997 9 14919358 14920859 PCT
Pvu9g0996 9 14908767 14909937 Pvu1g0563 1 6377952 6380010 PCT