Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0554 ATGGGTTGGAAAGCAGCTCAAAAGCTCATTAGGCACTGGAAATTTCTTAGAGGGGATAATGTTATGATAATAAGGGGCAAAGATAAGGGTGAGACTGGGACTATTAAGCGTGTCATTCGCTCTCAGAATCGTGTCATTGTTGAGGGTAAAAATCTGGTGAAGAAGCATATTAAGCAAGGGCAAGGTCATGAAGGGGGTATCTTTGCAGTTGAAGCCCCAATCCATGCCTCCAACGTGCAAGTTCTTGACCCAGTCACAGGGAAGCCTTGCAAGGTTGGAGTTAAATATCTTGAAGATGGTACTAAAGTCAGAGTATCCAGAGGAATAGGAACATCTGAGTCTATAATCCCTCGTCCCGAGATCTTAAAGATAAGAACTACCCCAAGACCTACTGTCCTTGGTCCTAAAGATACTCCAATGGATCTTGTGCTGGAGAAGACTTACGATGCTAAAACAGGAAGGGGAATGCCTGAGCTTTAA 480 0.4396 MGWKAAQKLIRHWKFLRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLVKKHIKQGQGHEGGIFAVEAPIHASNVQVLDPVTGKPCKVGVKYLEDGTKVRVSRGIGTSESIIPRPEILKIRTTPRPTVLGPKDTPMDLVLEKTYDAKTGRGMPEL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0554 159 SUPERFAMILY Translation proteins SH3-like domain 10 108 IPR008991 -
Pvu1g0554 159 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 51 108 IPR003256 GO:0003735|GO:0005840|GO:0006412
Pvu1g0554 159 TIGRFAM rplX_bact: ribosomal protein uL24 14 108 IPR003256 GO:0003735|GO:0005840|GO:0006412
Pvu1g0554 159 PANTHER 39S RIBOSOMAL PROTEIN L24, MITOCHONDRIAL 1 151 - -
Pvu1g0554 159 Pfam KOW motif 17 48 IPR005824 -
Pvu1g0554 159 SMART kow_9 14 41 IPR005824 -
Pvu1g0554 159 ProSitePatterns Ribosomal protein L24 signature. 18 35 IPR005825 GO:0003735|GO:0005840|GO:0006412
Pvu1g0554 159 Gene3D - 4 111 IPR014722 -
Pvu1g0554 159 Hamap 50S ribosomal protein L24 [rplX]. 13 107 IPR003256 GO:0003735|GO:0005840|GO:0006412
Pvu1g0554 159 CDD KOW_RPL26 18 81 IPR041988 GO:0003723
Pvu1g0554 159 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 1 151 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0554 Pvu-Chr1 6205044 6207980 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0554 K02895 - gmx:100499816 305.064