Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0546 ATGAGACGCGCTCCTCCCTCTCTCCATCTCCTCGCCGCCACTGACACCGCCGCAGCCACCGCCACCTCGATGTCTTCTTGTCCTCCCCATCGAGGACGCGGTAGAGGCTTCTCCGGCCGCCCGTACTCTGGCGGCAGAGGCCACTTCATCTCCGGCGACGCGCACTTGCTCTCGGTCCGCGAAGCCAATTTAGGACTCCGGCGAGGCGAGAGTGGAAGCTTCACGAACCAAACGCCGGATAATCAGAATCCCCTGTCTAACCTGAGACCTCATCCACCGTCGCTTCACAATCAGCGTCCTGAGTTCCGTAATCGACCTCATTCCCCGCACTTTCGGCCGCATTTCCCGCAGTATCGGCAGCATCCTCCGCCTGAGCACCGGCCGACGTTTCGTCCGCATCCCCCGCTGAGGCCGCCATATTATCGAGACTGGGAGTTTGCCCTGACGCCGCCGCCTCCTCATTGTGAACGGTTTAAAGTTCTTTCCTATAATATATTGGCTGACTACCTTGCTTTGGACCACCGGAACAAACTTTATTTTCACATACCTTCATACATTTTGGACTGGCAGTGGAGAAAGAGAAGCATACTTTTTGAGTTGGGGCTGTGGTCAGCTGATATCTTGTGTTTACAGGAGGTCGATAGATTTCATGAGTTGGCAGAGGAGTTGAAGCCTAGGGGATACTGTGGCATCTGGAAGATGCGTACAGGTAATCCAGTTGATGGCTGTGCAATCTTTTGGAGAAAATCAAGGTTCAATTTGTTATATGAAGAGTGCATTGAGTTTAATAAGCTGGGACTTAGGGACAATGTCGCCCAGCTATGTGTACTAGAGATCATTAATCGAAATGGATCTCTCCCATCCAGCTTGACAGGCTCGAGTAAAGTTGTGGTTTGTAACATTCATGTGCTTTACAATCCTAACAGGGGAGAAATTAAGCTTGGCCAGGTTCGAGTGCTACTTGATAAGGCTAAATCTGTTTCTAAACTCTGGAATGATGCCCCTGTAGTTATCTGTGGGGATTTTAATTGTACACCCAAGAGTCCGTTATACAACTTTATATCAGAACAGAAGTTAGATCTGTCCGGAATAGATAGGAATAAGGTATCAGGACAAGCTTCTGCAATTCGTGCATCAAAGCCCTATTATGGTCCTAATGCTGGTGAAAAATCTGCTAGTGGTTCAGTTCAGGCCAGATCCACTGAAGGTGTCAAGGAAGTTATTGAACAAAATAACTATCGGTCGGACATGACAGACCTGGACACTAAATGTCACAGTTTGGGAAAAGATACTCAGGAAACTGCTGTTGACCATTCAAAGATCTTTTGTGAAGTTGGTAGTATAAAAGAACAAGATCCTTCTTATAGTGAAGGTAGGATCCATATTGTTCCTGTAATTGGTGATATTAATGACATTACACCTGTGACCTCGACCTCTTCAGCTACTGAAGCAGTTAACAGAGAAAAAACTGGGATGGGAAGCAATGAACATATACCAGATGCTGTCCCAACTTCAAATAAAGAATTAAGCAAAAAATCCAACTTACATGTCCTTGAAGAGAATGAACAAGTTGAGTTTGACTGTTCCCCAACTCTTCTTCAGGAAGATAATCAATCTTTCACAAGGGTGAGGATTGTTCTTGAGTCAACAGATCTAAACAATGCAGTAATTTCTCCAACTAAGCCATCCAGCCAAACTTCAGTTTCCAAAGCATTTGAAGTCCCTTGTATAGAGTATGGAGATAGCCCATCTCATGAAGAAATTGCTGATGACCAAAATAGCAGCGCATCAACATATCTAGTTGATAAATCGCATCAATTGTCCAACATTAACTTTCCACTTGATGATAAAGAGAAATCATTCTTTGATGAGATAGATAAAACCGTCACAGACTGTGAAAATATTGATGATAACAGCAGTTTTGTATCTTCCTTACATAATACTGAAGGAGTTGCTCTTGACACCAGTCCATCAAAGAAATCAGATCTTGATAAGTCCTATCAGTACAAGGAATTAAATTCTGCTTCCAACTTGTTGCTGCCTGTAGAAAGCAATGAAGTTGAGGATGACTTATCACGTAGTCAGATTTCTAAATCTATTTGTGGGCAGGAAGCTACTTATAATCCAGCATTGTGGACCCCTACGGAGATAGAAACTGCAACAGGAAATGAAGATTGCACCTTCTTGGAGCATCCTTTACTTCTTAGGAGCACATACACTGAGGCAATGGATCGTTCAGGGACCAGAGACCCCTATGGAGAGCCCCTTGTTACCAGTTATAATAGGCGCTTCTCGGGGACTGTTGATTACATTTGGCGATCTGAAGGTCTTCAAACAACCGGAGTTCTTGCTCCGATGGCTAAATATGCCTTGGAACATACTCCGGGATTCCCAACAAAGAAATGGGGCAGTGATCATATCGCATTGGTGACCGAGCTGGCTTTCATGAAAGATGGTACCGACATCTGCACCAAGGTTAAATAG 2484 0.4481 MRRAPPSLHLLAATDTAAATATSMSSCPPHRGRGRGFSGRPYSGGRGHFISGDAHLLSVREANLGLRRGESGSFTNQTPDNQNPLSNLRPHPPSLHNQRPEFRNRPHSPHFRPHFPQYRQHPPPEHRPTFRPHPPLRPPYYRDWEFALTPPPPHCERFKVLSYNILADYLALDHRNKLYFHIPSYILDWQWRKRSILFELGLWSADILCLQEVDRFHELAEELKPRGYCGIWKMRTGNPVDGCAIFWRKSRFNLLYEECIEFNKLGLRDNVAQLCVLEIINRNGSLPSSLTGSSKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKSVSKLWNDAPVVICGDFNCTPKSPLYNFISEQKLDLSGIDRNKVSGQASAIRASKPYYGPNAGEKSASGSVQARSTEGVKEVIEQNNYRSDMTDLDTKCHSLGKDTQETAVDHSKIFCEVGSIKEQDPSYSEGRIHIVPVIGDINDITPVTSTSSATEAVNREKTGMGSNEHIPDAVPTSNKELSKKSNLHVLEENEQVEFDCSPTLLQEDNQSFTRVRIVLESTDLNNAVISPTKPSSQTSVSKAFEVPCIEYGDSPSHEEIADDQNSSASTYLVDKSHQLSNINFPLDDKEKSFFDEIDKTVTDCENIDDNSSFVSSLHNTEGVALDTSPSKKSDLDKSYQYKELNSASNLLLPVESNEVEDDLSRSQISKSICGQEATYNPALWTPTEIETATGNEDCTFLEHPLLLRSTYTEAMDRSGTRDPYGEPLVTSYNRRFSGTVDYIWRSEGLQTTGVLAPMAKYALEHTPGFPTKKWGSDHIALVTELAFMKDGTDICTKVK* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0546 827 MobiDBLite consensus disorder prediction 68 132 - -
Pvu1g0546 827 MobiDBLite consensus disorder prediction 69 93 - -
Pvu1g0546 827 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Pvu1g0546 827 MobiDBLite consensus disorder prediction 477 507 - -
Pvu1g0546 827 MobiDBLite consensus disorder prediction 382 403 - -
Pvu1g0546 827 MobiDBLite consensus disorder prediction 19 43 - -
Pvu1g0546 827 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 35 817 - -
Pvu1g0546 827 SUPERFAMILY DNase I-like 146 360 IPR036691 -
Pvu1g0546 827 Gene3D Endonuclease/exonuclease/phosphatase 135 432 IPR036691 -
Pvu1g0546 827 Gene3D Endonuclease/exonuclease/phosphatase 655 825 IPR036691 -
Pvu1g0546 827 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 35 817 - -
Pvu1g0546 827 Pfam Endonuclease/Exonuclease/phosphatase family 161 362 IPR005135 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0546 Pvu-Chr1 6134801 6143346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0546 162 357 EF-hand Containing Proteins AT5G54130 28.111 3.10e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0546 - - vun:114194208 1340.48