Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0530 ATGCAATTAACCGCACTCACCACCACCTTCTCACGCCTCCAACTCCAAGTCCCACTCCCTCCGGACACCACCAAACGACGCGCCGCCGAACAAACCTGCTTGGCGCTCCTCCGCACGTGCCACACGCTCGCCACCCTCACGCGAATCCACGCCCTCATCCTCAAGCTCGGCCTCCACCACAACCCTCTCGTCCTCACCAAGTTCGCCTCCACCGCCTCCGACCTCGACGCCGTTCACTATGCCGCCTCCGTCACATTCCTCGACGACCAAAACGACGAAACTACTCCTCGCCCGCGCGCCTTCCACGACGCTTTTCTCTTCAACACGTTCATCAGAGCCTTCGCCCAAACGACGCACGCCAAGCCCCGCGCCCTGCGTTTCTACCGCGCCATGCTCCGACACGCCGTTTCGCCGAACAAGTTCACCTTCCCGTTCGTCCTCAAGGCCTGCGCCGGACTCGCGAGCTTGCCCCTGGGGATGGCGGTGCACTCCGCGGTGGTGAAGTTCGGGTTCGAAGAGGATATCCACGTCCGGAACACCATGATCCACATGTATTGCTGCTGCGAGGAAGGGTCTAAACCAAACTCTGCTCAGAAGGTGTTCGAAGAAAGTCCTGACCGCGATTTGGTGACGTGGAGCGCCATGATTGGAGGCTACGCACGTACCGGGAATTCCACACGCGCGGTTTCGTTGTTCAGAGAGATGCAG 708 0.6059 MQLTALTTTFSRLQLQVPLPPDTTKRRAAEQTCLALLRTCHTLATLTRIHALILKLGLHHNPLVLTKFASTASDLDAVHYAASVTFLDDQNDETTPRPRAFHDAFLFNTFIRAFAQTTHAKPRALRFYRAMLRHAVSPNKFTFPFVLKACAGLASLPLGMAVHSAVVKFGFEEDIHVRNTMIHMYCCCEEGSKPNSAQKVFEESPDRDLVTWSAMIGGYARTGNSTRAVSLFREMQ 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0530 236 Gene3D Tetratricopeptide repeat domain 107 236 IPR011990 GO:0005515
Pvu1g0530 236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 236 IPR002885 -
Pvu1g0530 236 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 138 IPR002885 -
Pvu1g0530 236 PANTHER - 31 236 - -
Pvu1g0530 236 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 236 - -
Pvu1g0530 236 Pfam PPR repeat 210 236 IPR002885 -
Pvu1g0530 236 TIGRFAM PPR: pentatricopeptide repeat domain 210 236 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0530 Pvu-Chr1 5873986 5874735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0530 122 235 Glycoside Hydrolase AT3G49170 34.483 8.78e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0530 - - pvu:PHAVU_001G0518000 478.018