Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0529 GTTACAGGGATGTGTCCTGACGAGATCACCATGGTTTTGGTTTTGTCTGCGTGTGCTGATTTGGGTGCGCTTGAGTTGGGGAAGTGGTTGGAGTCTTATGTTGAGAGGAGGAGCATAACGAAGTCTGTGACGTTGTGTAATGCAATGATAGACATGTTTGCGAAGTGTGGTGATGTTGATAGAGCTGTGAAAATTTTCAGGGAAATGGAAATGAGGACCATAGTTTCATGGACTTCGGTGATTGTTGGTTTGGCAATGCACGGTCGCGGATTGGAGGCTGTTTCTCTTTTTGATGAGATGGTGGAACAAGGGGTGGAGCCTGATAATGTTGCTTTTGTTGGGGTGCTTTTTGCTTGTAGTCACTCAGGACTGGTTGATAAGGGGCATTACTATTTCAAAACCATGGAGAATAGGTTCAACATTGTGCCAAAGATTGAGCACTATGGCTGCATGGTGGATATGTTGAGTAGAGCAGGGCTTGTGAATGAGGCTGTGGAATTTGTTCGAGCCATGCCAATTGAGCCAAACCAGGTCATATGGAGAAGCATAGTCACTGCTTGTAATGCTCGTGGTGAGCTCAGGCTCGGTGAGAGCATGGCTAAGGAGCTAGTCAGGAGCGAGCCAATGCACGAGTCTAACTATGTGCTGCTGTCGAACATTTACGCAAAATTGATGCGCTGGGAGAAGAAGACCAAGGTTAGGGAGATGATGGATGTGAAGGGGATGAGGAAGATTCCAGGGAGCACCATGATTGAGATGAATAATGAAATCTATGAGTTTGTTGCTGGGGATAAGTCACATGATCAGTATAAAGAGATATATGAAATGGTGGAGGAGATGGGAAAGGAGATTAAGAGAGCAGGGTATGTGCCTACAACATCACAGGTGTTGCTTGACATTGATGAAGAAGATAAGGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCTATTGCTTTTGGTCTTCTGAGTACACCCCCTGGAACACCAATTAGAATTGTGAAGAACTTGCGTGTTTGTGAAGATTGCCACTCTGCTACCAAGTTCATTTCTAAGGTTTATAGCCGAGAGATTGTGGTGAGGGACCGCAATCGCTTCCACCATTTCAAGAATGGTTTGTGTTCCTGTGGAGACTTCTGGTAA 1143 0.4514 VTGMCPDEITMVLVLSACADLGALELGKWLESYVERRSITKSVTLCNAMIDMFAKCGDVDRAVKIFREMEMRTIVSWTSVIVGLAMHGRGLEAVSLFDEMVEQGVEPDNVAFVGVLFACSHSGLVDKGHYYFKTMENRFNIVPKIEHYGCMVDMLSRAGLVNEAVEFVRAMPIEPNQVIWRSIVTACNARGELRLGESMAKELVRSEPMHESNYVLLSNIYAKLMRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGKEIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFGLLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYSREIVVRDRNRFHHFKNGLCSCGDFW* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0529 380 Pfam PPR repeat family 73 119 IPR002885 -
Pvu1g0529 380 PANTHER - 4 366 - -
Pvu1g0529 380 Pfam PPR repeat 46 72 IPR002885 -
Pvu1g0529 380 Pfam PPR repeat 147 171 IPR002885 -
Pvu1g0529 380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Pvu1g0529 380 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 42 72 IPR002885 -
Pvu1g0529 380 TIGRFAM PPR: pentatricopeptide repeat domain 75 108 IPR002885 -
Pvu1g0529 380 TIGRFAM PPR: pentatricopeptide repeat domain 46 71 IPR002885 -
Pvu1g0529 380 Gene3D Tetratricopeptide repeat domain 9 122 IPR011990 GO:0005515
Pvu1g0529 380 Pfam E+ motif 257 284 IPR046849 -
Pvu1g0529 380 Gene3D Tetratricopeptide repeat domain 123 317 IPR011990 GO:0005515
Pvu1g0529 380 Pfam E motif 192 252 IPR046848 -
Pvu1g0529 380 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 366 - -
Pvu1g0529 380 Pfam DYW family of nucleic acid deaminases 288 380 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0529 Pvu-Chr1 5867594 5868839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0529 9 380 Glycoside Hydrolase AT3G49170 43.351 6.10e-114 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0529 - - pvu:PHAVU_001G0518001 769.615