Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0509 ATGTCTTTTGACCTCAACAAAGAGCTTGCTCTATTGGTCTTAAAGTACTTTCATGACCAAAATTTTAAGGAAACAGCACTTACGCTTGGTTGTGAAAGTGGGTTATACTTTGACATGAAGTATTTTGAGGACATGGTGCTTAAGGGCAAATGGGATGATGCTGAGAACTATCTTTTAGGGTTCACAAAGGTCAAGGACAATGACTACTCAATCAAGATATACTTTGAAATGAGGAAACAGAAATACTTTGAGGCATTGGACAATAATGATCGTTACAAGGCCTTGGATATTCTCTTGAAGGATCTCAAAATCTTTGCACAAGGGAATGAGATGTTGATCAAAGACCTTAGTCACCTTTTGATAGTTGATAACATAAGGGAAATTAAACCAACATATCGAGATGCAATTTCTGAGAGGAAGAATTTGATATTTGAAATTAAGAAAATTATAATTCAACATCCTCTTTTAGGTGGTAAGCTAAAACTGCCAGACACTGAAATTCACAGACTACGTTATCTTCTCAGTCAAAGATGTGCATTTCAGCCACACATGAAATTTATTTACTGTTCCATATTTGTTAGCTTGAAATGGCAGAAGCATCAAAAGCCTGATCAAGATCCTGACCTGTTAAGGGATCATGACAGTAATTCCATACCTTCTGCATCAGCTCTAATGAATTCAGGATCAGCTTTGGAGTGGAAACTTTCAACTAGTAGAAGGCTAAGTTTGGATTCTGAACAGGGAAACTGCAATGGAGTTTTGGGGGATGTGAACAAGCTTTCAATTGAAGAATCCCTTAACAAATCAAAGAATGCATTTGATATTGGCACATCATCTCAGTACCAGTTCTTGCAGCTCCCTAAGCATCCTGAAGTAAAAAGGATTGTTAAACTGGCGTACAACAATGCGGGAAATTCAATTTTGGCATTGGCATCGAATGGTATTCATCTGGTTTGGCTCTGGCCACGTACTGGCTTTAACTTGGATGGAAAGGCTAGTGCTCAGGTTTGCCCTCAATTGCAGCAACCAAAGGATGGCTTCCAAGTTATGATCAATGACCTTTCAAGGATCAGAAGTGCAAACCCAGTTTCCTGTTTTGCATTATCAAAACAGGGTGGATATGTCATATCAACATCAGGGGGCATGATCTCTTTGTTCAATATGGTGTCCTATAAGACTCTGAGAACCATCATGTCTCCACCACCTATGGTAACATGCCTTGCTTTCTACCCTGAAGATAACAATATATTTGGCATTGGCTTTGATGACTCCAGCTTAATTATGTATAATGTTCGTGATGATCAGGTTTTACACAGGCTTGAGGGTCACTCCAAAAGAGTTACTACTCTTGCCTTCTCAAGCACTTCCAACATTCTTATATCTGGTGATGCAAATGGTCAGATCATTCTATGGGATACAAATGAGTGGAAAATTCTGAAAGATATAAAGTTGCAAATACAAGAAAACCACATGCTAGAATCTGAAACTCAAATTCAGTTTCATCCAGATCAAATGAAATTCCTTGCTGCATATATTGGTCATCTTGCAATATATGAAATAACAGAACTAAGATGTGTCAATGAGTGGGTTCCAGAAGTTCAACAGCTTATCTCTCAAGCAACCTTCTCATCAGATGGTCACATTGTGTATTCCATTTTTGTTGATGGGACAGTGACAGTATTTGATGCTACAAATTTTGAAATTCGTTGTAGGATTTGTACCTCTTCTTATCTTCCTCCAATTTCAAGTTTGAGCATCTACCCAATTTCCATAGCAGCACATCCTCAGAAACCAAACCAGTTTGTTGTGGGGCTCACAGATGGCAGTGTTTATGTGTTTGAGCCACAGAAGCCAGGGGGTGATTGGATCAAAAATCATTGA 1881 0.386 MSFDLNKELALLVLKYFHDQNFKETALTLGCESGLYFDMKYFEDMVLKGKWDDAENYLLGFTKVKDNDYSIKIYFEMRKQKYFEALDNNDRYKALDILLKDLKIFAQGNEMLIKDLSHLLIVDNIREIKPTYRDAISERKNLIFEIKKIIIQHPLLGGKLKLPDTEIHRLRYLLSQRCAFQPHMKFIYCSIFVSLKWQKHQKPDQDPDLLRDHDSNSIPSASALMNSGSALEWKLSTSRRLSLDSEQGNCNGVLGDVNKLSIEESLNKSKNAFDIGTSSQYQFLQLPKHPEVKRIVKLAYNNAGNSILALASNGIHLVWLWPRTGFNLDGKASAQVCPQLQQPKDGFQVMINDLSRIRSANPVSCFALSKQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSLIMYNVRDDQVLHRLEGHSKRVTTLAFSSTSNILISGDANGQIILWDTNEWKILKDIKLQIQENHMLESETQIQFHPDQMKFLAAYIGHLAIYEITELRCVNEWVPEVQQLISQATFSSDGHIVYSIFVDGTVTVFDATNFEIRCRICTSSYLPPISSLSIYPISIAAHPQKPNQFVVGLTDGSVYVFEPQKPGGDWIKNH* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0509 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 472 - -
Pvu1g0509 626 Gene3D - 357 622 IPR015943 GO:0005515
Pvu1g0509 626 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Pvu1g0509 626 SUPERFAMILY WD40 repeat-like 360 616 IPR036322 GO:0005515
Pvu1g0509 626 SMART WD40_4 522 562 IPR001680 GO:0005515
Pvu1g0509 626 SMART WD40_4 433 472 IPR001680 GO:0005515
Pvu1g0509 626 SMART WD40_4 390 430 IPR001680 GO:0005515
Pvu1g0509 626 SMART WD40_4 350 387 IPR001680 GO:0005515
Pvu1g0509 626 SMART WD40_4 580 614 IPR001680 GO:0005515
Pvu1g0509 626 Pfam WD domain, G-beta repeat 435 472 IPR001680 GO:0005515
Pvu1g0509 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 481 IPR001680 GO:0005515
Pvu1g0509 626 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 4 624 IPR027728 GO:0006355
Pvu1g0509 626 SMART ctlh 35 93 IPR006595 -
Pvu1g0509 626 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Pvu1g0509 626 PANTHER TOPLESS-LIKE PROTEIN 4 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0509 Pvu-Chr1 5508990 5513792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0509 390 564 Miscellaneous Gene Families AT5G08390 22.727 4.30e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0509 - - vun:114195532 709.523