Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0472 ATGGATGCATCCACAACTTCTTATGATAAAAAAATGTCCCTCCAAACACTCATTTTCACACCCCTTTTGGTTCTATTCATGAGTTTCCATTCTCATGCTCTTGTCCAACCTTCTAATTGGAAATACGCGCCAAACAAGGGAGGTGTTAGAGCTGCGTATTGGCCTTCTGGTGATGATCTTTCACCCTCTTCCATTGACACAAAATACTTCACTCACATCTACTATGCCTTCATCCAACAAGACCCTCAATTGTTCCACCTTAGTGTCACCGAATTTGAGAAAAAATGGATTCCACAGTTCATCAACGGCCTCCGCCACCGTTACCCGCCGGTCAAAACTCTCTTGTCAATTGGCGGCGGTGGCAGCAACTCAACCGCCTTCTCCCTCATGGCCACCACCAAACACACCCGACAAGTGTTCATCAACTCCACCATCCACGTGGCGCGCCAATACGGTTTCGACGGTCTCGATTTGGACTGGGAGTTCCCAGAAAACGAGGTCGATATGTCTAACCTAGGTGTCTTGTTTCATGAATGGCGTCAAGCTATAACGTTGGAAGCACACAGTTGTAGAAAACCGCCACTACTTTTAACAGCAGCCGTTTACTATGCTTCCACCATCAAACTCATTGGTAATGGGCCAAGAACATATCCAATTCAAGCCATTCGCGATTACTTGGATTGGGCCAGCCCAATGTGCTTTGACTATCATGGGGCCTGGGACAAATTTACAGGCTTTAATGCTGCTTTGTACGATCCAAATTCCAACATAAGTACCAAGTATGGGATTGGATCTTGGGTCGAAGCGGGTGTACCCACCCATAAATTGGTTATGGGTTTTCCCTTATACGGGCGAACATGGAGGCTTAAAGATCCAAATGTTGATGGGGTTGGAGCAGAAGCTGTTGGGGCAGCCACTGATACGGATGGTACTTTGGATTATGATGAAATTTTGGTGTTCAACAAAGAAAATGGTGCCACTGTTGTGTATGATGATGTAGCTGTGTCTTTCTACTCTTATGCGGGTACTACTTGGATCGGGTATGATGATGGACCATCCATAACAAAGAAGGTTCACTTTGCTAGGGCTTCGGGCTTGAAGGGCTATTTCTTTTGGGCTCTTGGTAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGGGACACTGA 1179 0.4597 MDASTTSYDKKMSLQTLIFTPLLVLFMSFHSHALVQPSNWKYAPNKGGVRAAYWPSGDDLSPSSIDTKYFTHIYYAFIQQDPQLFHLSVTEFEKKWIPQFINGLRHRYPPVKTLLSIGGGGSNSTAFSLMATTKHTRQVFINSTIHVARQYGFDGLDLDWEFPENEVDMSNLGVLFHEWRQAITLEAHSCRKPPLLLTAAVYYASTIKLIGNGPRTYPIQAIRDYLDWASPMCFDYHGAWDKFTGFNAALYDPNSNISTKYGIGSWVEAGVPTHKLVMGFPLYGRTWRLKDPNVDGVGAEAVGAATDTDGTLDYDEILVFNKENGATVVYDDVAVSFYSYAGTTWIGYDDGPSITKKVHFARASGLKGYFFWALGKDKDWTISRQASNAWGH* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0472 392 SUPERFAMILY (Trans)glycosidases 47 389 IPR017853 -
Pvu1g0472 392 SUPERFAMILY Chitinase insertion domain 283 348 IPR029070 -
Pvu1g0472 392 SMART 2g34 48 377 IPR011583 GO:0008061
Pvu1g0472 392 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 153 161 IPR001579 GO:0004553|GO:0005975
Pvu1g0472 392 Gene3D - 282 348 IPR029070 -
Pvu1g0472 392 Pfam Glycosyl hydrolases family 18 52 377 IPR001223 GO:0005975
Pvu1g0472 392 Gene3D Glycosidases 63 378 - -
Pvu1g0472 392 PANTHER CHITINASE 37 391 - -
Pvu1g0472 392 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 48 392 IPR001223 GO:0005975
Pvu1g0472 392 PANTHER CLASS V CHITINASE CHIT5A 37 391 - -
Pvu1g0472 392 CDD GH18_plant_chitinase_class_V 49 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0472 Pvu-Chr1 4983477 4985803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0472 49 390 Glycoside Hydrolase AT4G19810 43.895 6.53e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0472 K01183 - gmx:100787511 667.922