Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0464 ATGGAAATGTTGCTAAAAAACCCTTTATACACAAACCCAGAACCTTGTCAGCACCTTGCTGAGTACAAGCTCAAGCATGGTTTCAGTGGCTACAAAGCCATCCAAAAGCTCCTTGTGACCTCCTCAATTGGGAAAACCAGTGTGAAGAAACCCAACACAAAGGTACCCAGATGCAGTTTCTGTAATGGCTGTGAAGGGAGGTTCTATTTGTGTCTGATTTGCTCTTCATTCTCATGTTTGGATCACACCATTCTGCACCCTCAGTCAGAAGCTGGTCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGGGGTGGCAAGTGGTGCCACTGGGAATGAAAGCATTGGGCAGAGGTTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGGGTTGAATTTTCAGAAATCTAAGTGTGGAGTTTCCACCAAAGATGTGAGAGCTAAATCATGTTATCCTATGGGGTTGAGGGGATTGAACAATCTGGGTAGCACGTGTTTTATGAATTCTGTGCTCCAAGTGTTGCTTCATGCACCTCCTGTCAGGGACTATTTCCTGAGTGGTGGACACAGATGGGAAGCTTGTCATCGTAGAAGAACCACAGATCTGATGTGTTTACTTTGTGAAGTCAATGCTATTTTCTCAGCTGTGTATTCGGGGGATCAGAATCCATATACTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGGGCAAAGCAAGGAATGGAAGCAAAGGTAACGAAGACTGTCAATGTATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACTTGTATGGCCTGTGGATTCACCTCAACAACTTATGATCCTTGTGTTGACATTTCACTTAACTTGGACACTAGTGTCTCTTCAACAGAAAAGGGTAAAAAGCTTACCAAACGGAATGAGGATGGAAATATGTCTACACTTTCGGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTTTACTGCCAGAATTGTCAGGAAAAGCAGGACTCTTTGAAGCAAATGTCCATTAGAAAGCTTCCGTTAGTACTTAGTTTACATGTAAAACGATTTGAGCACTCTTTTGTCAAAAGGTCTTCAAGAAAAATAGATCGCTACCTGCAGTTCCCATTTTCCTTAGACATGTCTCCATATTTGTCCTCCTCAATCCTTAGAGCCAGATATGGAAATAGAATTTATTCTTTTGGGGGTGATGAATCAGATATATTTTCTGAGTTCGAAATTTTTGCTGTGGTGACACATTCGGGTACGCTCGAGTCTGGCCATTATGTTTCGTTCGTGCGTATAAGGAATCAATGGTACAAATGTGATGACGCTTGGATAACTGAGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGTGCAGAAAACTTTGTACAATAAAGCAAATGAAGACCAGAGTCACGCACCAAATTGCCCTGGAAGAGAGCTATTTTTTCCTATTGCTGGTTTTTGCTAG 1665 0.424 MEMLLKNPLYTNPEPCQHLAEYKLKHGFSGYKAIQKLLVTSSIGKTSVKKPNTKVPRCSFCNGCEGRFYLCLICSSFSCLDHTILHPQSEAGHAVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSMGVASGATGNESIGQRLIKRRRLVSGVGLNFQKSKCGVSTKDVRAKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPVRDYFLSGGHRWEACHRRRTTDLMCLLCEVNAIFSAVYSGDQNPYTPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKARNGSKGNEDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTSVSSTEKGKKLTKRNEDGNMSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSFVKRSSRKIDRYLQFPFSLDMSPYLSSSILRARYGNRIYSFGGDESDIFSEFEIFAVVTHSGTLESGHYVSFVRIRNQWYKCDDAWITEVDEATVRASQCYMIFYVQKTLYNKANEDQSHAPNCPGRELFFPIAGFC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0464 554 CDD Peptidase_C19D 181 523 - -
Pvu1g0464 554 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Pvu1g0464 554 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 7 550 - -
Pvu1g0464 554 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 550 - -
Pvu1g0464 554 SUPERFAMILY RING/U-box 15 120 - -
Pvu1g0464 554 Pfam Ubiquitin carboxyl-terminal hydrolase 182 522 IPR001394 GO:0004843|GO:0016579
Pvu1g0464 554 Gene3D Cysteine proteinases 175 531 - -
Pvu1g0464 554 ProSiteProfiles Zinc finger UBP-type profile. 38 132 IPR001607 GO:0008270
Pvu1g0464 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 132 IPR013083 -
Pvu1g0464 554 SUPERFAMILY Cysteine proteinases 177 524 IPR038765 -
Pvu1g0464 554 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 525 IPR028889 -
Pvu1g0464 554 Pfam Zn-finger in ubiquitin-hydrolases and other protein 58 117 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0464 Pvu-Chr1 4826738 4830319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0464 182 522 Miscellaneous Gene Families AT2G24640 29.226 4.55e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0464 K11366 - gmx:100806347 1036.17