Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0448 CATCAAACAAGAAATCCTAGCAAGAGCGGAAACAGAGTATCTTCTTGTGTGCGGTCTTTACTGCTTTCTCTGTTATTATTCTTCTTCTTCTACTTCTCCGATTCCACCTTCCGAGTTGACTCACTCGCCATGGAGGAACAACACCACCGGCAGCCTAAACCCAACAGCATCAACGCTTCCGAAAGCGACCCTTTCCTCCTAAACTACACACCTTCGGATCTCCGAACCGCTTCGGAGTTTCTCGCCACGTGGCTCCCCTTCCTCTCCCGAGATCTCTGCACGCGTTGCACCCAATCTCTCTCCGATCGTATTCAGTCCATCGACCCAGGTGAAGTGCCCCAAAACGACAGCCCCAATGAACAAATCGATGCTGAAGATAACTGCGACGCGCATTCGCTGGGGAGTTGGAAAGACGGGGCGGAGGTGAATACCTCTGTGGAGACTCCGAGCCAGAGAATTTGTTGGGCCGACATGGCCCAAGAGGACGATGAGTTTGGCGAAGAAGAAAACAGCAACAATGGGGTTACTGTTGATGTGGGTGATTCGAATGATACTTCTGATGTGGGTACAGTGGTGGCTGAGAAGCCGACTTTGCCCAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGCAAGAAGGACTTTATCTGCTTTGAGAGGGTTAATGGGAAGCTTGTCAACATTCTTGAAGGGCTTGAACTCCACACTGGTATTTTCAGTGCTGCTGAACAGAAGCGGATTGTTAGTTATGTTGCTTCATTGCAGGAGATGGGGAAAAGAGGAGAATTGAAAGAGCGGACGTTTTCTGCTCCCCAAAAGTGGATGAGGGGCAAGGGACGACAAACCATCCAATTTGGGTGCTGTTACAATTATGCAGTGGATAGAGATGGTAACCCTCCTGGTATTCTTGCGCATTCAAAGGTTGATCCAATACCTGATCTTTTCAAAGTCATCATCCGGCGACTGATAAAATGGCATGTACTACCTCCTACTTGTGTGCCAGACAGTTGCATTGTTAATATATACGAAGAAGGGGACTGTATTCCTCCACACATAGATAACCATGACTTTGTTCGACCATTTTGCACTGTCTCATTTCTTAGCGAGTGCAATATAGTTTTTGGATCAAACTTAAAGATTGTAGGCCCTGGAGAATTTGATGGTTCGATTGCTATTCCTTTACCTATGGGATCTGTACTTGTCTTGAACGGAAATGGAGCTGATGTAGCCAAGCACTGTGTGCCAGCAGTTCCTTCGAGAAGGATATCAATCACATTTAGAAGAATGGATGAGTCAAGGAGGCCTTTTGGATATGTTCCTGAACCTGATCTTCAGGGAATTCAACCATTGGCCTATGAAGAAGTTGAGCAGGAAAAGAAATCTGGTGGACACAGAGGTGGTCGTCATATGAGGAGACATAGAGACAGGAGAGGAGGTGGCAGGAATGATGCAATGGGATTTGCATCTAGAAATGATAGGTTCTCAGAGCACCGTGACTCGAATCATAGTACACCCAGATATGGAAATAGGTGGAGTAGAAAGCCTGGTAGTTGA 1560 0.4699 HQTRNPSKSGNRVSSCVRSLLLSLLLFFFFYFSDSTFRVDSLAMEEQHHRQPKPNSINASESDPFLLNYTPSDLRTASEFLATWLPFLSRDLCTRCTQSLSDRIQSIDPGEVPQNDSPNEQIDAEDNCDAHSLGSWKDGAEVNTSVETPSQRICWADMAQEDDEFGEEENSNNGVTVDVGDSNDTSDVGTVVAEKPTLPREQREYIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIFSAAEQKRIVSYVASLQEMGKRGELKERTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILAHSKVDPIPDLFKVIIRRLIKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGSNLKIVGPGEFDGSIAIPLPMGSVLVLNGNGADVAKHCVPAVPSRRISITFRRMDESRRPFGYVPEPDLQGIQPLAYEEVEQEKKSGGHRGGRHMRRHRDRRGGGRNDAMGFASRNDRFSEHRDSNHSTPRYGNRWSRKPGS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0448 519 MobiDBLite consensus disorder prediction 104 126 - -
Pvu1g0448 519 MobiDBLite consensus disorder prediction 457 519 - -
Pvu1g0448 519 MobiDBLite consensus disorder prediction 104 121 - -
Pvu1g0448 519 Gene3D - 218 436 IPR037151 -
Pvu1g0448 519 SUPERFAMILY Clavaminate synthase-like 230 431 - -
Pvu1g0448 519 MobiDBLite consensus disorder prediction 492 506 - -
Pvu1g0448 519 PANTHER RNA DEMETHYLASE ALKBH9B 138 505 - -
Pvu1g0448 519 PANTHER RNA DEMETHYLASE ALKBH9B 59 123 - -
Pvu1g0448 519 Pfam 2OG-Fe(II) oxygenase superfamily 234 429 IPR027450 -
Pvu1g0448 519 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 335 432 IPR005123 -
Pvu1g0448 519 MobiDBLite consensus disorder prediction 170 189 - -
Pvu1g0448 519 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 59 123 IPR044842 GO:0003729|GO:0006402|GO:0032451
Pvu1g0448 519 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 138 505 IPR044842 GO:0003729|GO:0006402|GO:0032451
Pvu1g0448 519 MobiDBLite consensus disorder prediction 166 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0448 Pvu-Chr1 4577446 4581321 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0448 K10767 - gmx:100797674 804.283