Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0445 ATGCTTGTTGTGGTTGGAGTGTCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCGTGATCGTCGTGGCCGTTGGGGTTCACTTTTTCGTCAAGTCCACCGCTTCCAAGTACTTCGAGGTCGACGCCAATTTCGAAGGGGACCACCACCAAGCCCTCGCCGACGCAATGCCCGGCGTTCTCTCCTCCGCTGACGATTCTCTCTGCCCCGTCTGCGCCGTCTGCGCCACCCCCAGCTCCAAGAAGTGCTCGCGCTGCAAAGCCGTCCTCTATTGCTCCCAAGAATGCCAGCAGTCGCATTGGAGGTCTGGGCATAAGACAGTATGCAAAGATTTTCGTGAAGTCGGTGCAAGAAGCCCGACCCAAAATGGGGTAATTAATCGTGGGTTTAAGTCTTCTGCTGCTGGGGGAAAGAGCTCGTCTTCGATTGCGCTGATACCTGGTTGTGGAACAATTTCTAGGCCAATCAAGCAGCCTAAAGATGTTCTTTTTCCCTATGATGAATTTGTCAAATTTTTTAACTGGAACAAGCCAGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGTCACCGCAGAGAATGCACTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGATAGAACAAGGCTAAGTTCACAGGTGTTTTCTCCTATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACTCTGGGCTATGGAAGACAAGAGGATGCTCACGAGTTTATGAGGTTTTCCATTGATACCATGCAATCTGTTTGCCTTGATGAGTTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTCCAGGAGACTACCCTTATTCAACACATATTTGGTGGCCGTCTACAATCTGAGGTGGTTTGCACAAAATGTGAAAAGATTTCAAAGCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAAGGAGCGACTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGCGCTCCAAATATTCTTACCATCGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAATAGCCTTCCCTGAGGCTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATGTTTATAAGCTGTATGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGACTTCCTGGGGAACTGGTACAGGATTGATGACTGGAAGGTTACGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTTTTGTATAGCAGGTGTAGTGCCAGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAACAGAAGTGGAAGTGGAAGTGGAGTCTGGACAAACTGAGCAAGATGAATGCCTCCTCTCGAATACGAAGATGTTGACTTGTAGTAGCGGTTCTGAGGTTTTGCCATCTGATATTAGTCCAGACTCAAATGTTTCTTCCACGTACGACTGCGAGTCTTCTGCTGGATTGAACTCAGAAGCCAAAGGAGAGCAGTTTGAGGATATGGGCATGATTAATGTTGATTCAACTGGTATTGCAAATGAAATTTCTTGTAGTGCTGTTGAATCAACATCTGTGCCTTTTTCTCAACCCGTCAATGATTTGGGGGATGTAGATATAACGGACAGATCATTTGAAGAGACTTCAGGCTGCAAGGAAGAGCAAGAAAATACTGATATGGTTAGGTCGTCTGGCCCTTGTCCTGGTTCACCAAATGACTCTTCCTTCTTCGATAAACATTCTTCTTTTTCAAGGGATCATCGAAACGTGGAAGAGGATTTAGAACACATAGCTGTGGTTGAAGGCAAGTTGATTGCAGCTAAAGATAATACATATTATGGTAATGGATATGTCAGTGCAAACGAGTCTTCTATTCCAGTTGAAGACGCTGGCAAAATTTCTGGCATCGGTTCTTCCCACTGA 2157 0.4469 MLVVVGVSWDLNWFLQLLLSVIVVAVGVHFFVKSTASKYFEVDANFEGDHHQALADAMPGVLSSADDSLCPVCAVCATPSSKKCSRCKAVLYCSQECQQSHWRSGHKTVCKDFREVGARSPTQNGVINRGFKSSAAGGKSSSSIALIPGCGTISRPIKQPKDVLFPYDEFVKFFNWNKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECTCNDWCFLCEFENHVDRTRLSSQVFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVVCTKCEKISKQYENMMDLTVEIHGDAASLEECLDQFTAKERLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPEALNLSPYMSEAGDGSDVYKLYGVVVHIDMLNASFFGHYICYIKDFLGNWYRIDDWKVTTVELEEVLSQGAYMLLYSRCSARPSGLQIQTSESSGIAEVQTTEVEVEVESGQTEQDECLLSNTKMLTCSSGSEVLPSDISPDSNVSSTYDCESSAGLNSEAKGEQFEDMGMINVDSTGIANEISCSAVESTSVPFSQPVNDLGDVDITDRSFEETSGCKEEQENTDMVRSSGPCPGSPNDSSFFDKHSSFSRDHRNVEEDLEHIAVVEGKLIAAKDNTYYGNGYVSANESSIPVEDAGKISGIGSSH* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0445 718 Gene3D - 64 115 - -
Pvu1g0445 718 ProSiteProfiles Zinc finger MYND-type profile. 70 110 IPR002893 -
Pvu1g0445 718 MobiDBLite consensus disorder prediction 638 656 - -
Pvu1g0445 718 Gene3D Cysteine proteinases 180 498 - -
Pvu1g0445 718 MobiDBLite consensus disorder prediction 623 661 - -
Pvu1g0445 718 CDD Peptidase_C19E 183 488 - -
Pvu1g0445 718 Pfam Ubiquitin carboxyl-terminal hydrolase 184 487 IPR001394 GO:0004843|GO:0016579
Pvu1g0445 718 SUPERFAMILY HIT/MYND zinc finger-like 70 114 - -
Pvu1g0445 718 ProSitePatterns Zinc finger MYND-type signature. 70 110 IPR002893 -
Pvu1g0445 718 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 184 490 IPR028889 -
Pvu1g0445 718 Pfam MYND finger 73 110 IPR002893 -
Pvu1g0445 718 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 651 - -
Pvu1g0445 718 SUPERFAMILY Cysteine proteinases 180 492 IPR038765 -
Pvu1g0445 718 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 651 - -
Pvu1g0445 718 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 185 200 IPR018200 GO:0004843|GO:0006511
Pvu1g0445 718 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0445 Pvu-Chr1 4555399 4562157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0445 5 495 Miscellaneous Gene Families AT4G31670 64.766 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0445 K11855 - gmx:100820594 1206.43