Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0398 ATGGCTTCTCTCTCAGTTTCAATGGTTCTTTCACACAGCTCCGCCACCAAGAACATGTCAAAGTCAAACCCTGCTCCCTCCGAAGCCTTCTTGAAGAGGAGTGCGGTGAAGAAATCGTCAGAGCCAAAACTACAAAAACTCAACATGGAAGCGTCTTTGAAGGAAAAAGCAGTGAAGGGTCTCACTGCTGCTGCAGTAGCATCGTGCATGGTGATTCCTGAAGTGGCTCATGCAGCGCCGTATGATTTCTCTCCTTCGCTCCAAAACTTTCTGCTAAGTATTGCGGCTGGTGGGTTTGTGCTCGTGGCGATATTTGCTGCTGTTATTGGAGTCTCCAACTTTGATCCAGTTAAGAGAACTTGA 363 0.4766 MASLSVSMVLSHSSATKNMSKSNPAPSEAFLKRSAVKKSSEPKLQKLNMEASLKEKAVKGLTAAAVASCMVIPEVAHAAPYDFSPSLQNFLLSIAAGGFVLVAIFAAVIGVSNFDPVKRT* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0398 120 Pfam Photosystem II reaction centre X protein (PsbX) 84 119 IPR009518 GO:0009523|GO:0015979|GO:0016020
Pvu1g0398 120 Gene3D Single helix bin 83 120 - -
Pvu1g0398 120 PANTHER OS07G0673550 PROTEIN 3 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0398 Pvu-Chr1 3974736 3975377 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0398 - - gmx:100780841 123.635