Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0393 ATGAAGCTTTGGTGCTGTCTATGCTTCACCGAGGAAGAACAAGATAACCTAAACCTCATGAAGGAAGAGGACATTTCCGAAAACGACGTCGTTCCCGCCGTTGGAGCCATCGCCGTCTCTGACCACGATGCTAACGACAACCGCGAAGATGGACGATTCGCGATGGCGCCGGTGCCGCCGCGCGCCGAGACATTGGTCTCCTGGTCCGGCGAGTGCAGCGCCGCCGCGTGCTCGGACAGCACCGTCGCAGGCGGCGTCGAGAGCCGCGATTTGAGCCACAAGCGCGCCAAGTTCTACGCCGATTTCGAGGAGCGTTTCTTTTCGACGAATGCAGGGAAATGCGGTGCGTCTAATGAATGTAGAGATTATGACTACATTAAAGATTCTCTTCGACCCAACGGTGAGACTTGTTGTGATACATTTGCATTGATGGGCGCTGGTGAGGATTGTGGCTTTGATTCCGGCATTGTGGAAGATGGTGAAGGAGATAGCAGTGATATCTTGAAAGTTGAAGATGTAGAGGTCAGAATGGATCTTACCGACGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTTTGCAAAGCTGCCAGGGTTTGTAAACAGTGGCGAAGTGCAAGTGCTCATGAAGATTTCTGGAAAAGCTTGAATTTTGAAGACCGGAACATTTCTGTCGAACAATTTGAGGACATGTGTAGGCGTTATCCCAATGCCACAGCAGTGAGCATATCTGGTTCTGCTATTTACTTGCTTGTCATGAGGGCCATCTCTTCTTTAAGGAATCTAGAGGCTCTTACATTAGGAAGAGGACAAATAGCTGACACTTTTTTCCATGCTTTAGCTGATTGTTCTATGTTAAAAAAGTTGAATATCAATGATTCTACACTTGGCAATGGAATTCAAGAGATAACTATAAATCATGACAGATTGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAACTTGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTGCTCAATTGTCCACTTTTGCATGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATACGAGCTGCTGCAACTTCATGCCCTCAACTTGTCTCACTGGACATGTCAAATTGTTCTTGTGTCAGTGATGAAACACTGCGTGAAATAGCATTGAGTTGTGCTAACCTTAGTTTCCTCGATGCATCATACTGCCCAAACATATCTTTGGAGTCTGTTAGACTGCCGATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGGATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTGATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGTTGACATCAGTGTCTTTGGATCTTCCCCATTTGCAGACTATTAGATTGGTACACTGTCGCAAGTTTGCTGATTTGAACTTGAGGACTATGATGCTTTCTAATATTCTGGTATCAAACTGTCCTGCTCTTCATCGAATCAATATCACTTCAAATTCACTTCAAAAATTAGCATTGCAAAAGCAAGAAAGTTTAACCACGTTAGCTCTGCAATGCCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCCTTGACAAACTCTATATGTGATGTTTTTAATGATGTTGGAGGATGCCCTATGCTGAAATCACTAGTTCTTGCTAATTGTGAGAGCTTGACCTCAGTTCGGTTCTTCAGCACCTCTTTAGTCAGTCTTTCCCTTGCTGATTGTCGGGCAATCACTTCTCTGGAGCTCACATGCCCTAACCTTGAGAAAGTCATTTTGGATGGTTGTGATCATTTAGAAAGAGCATCCTTTTGTCCGGTTGGTCTTCGATCTCTCAATTTAGGAATATGTCCAAAATTAAATATACTGAGCATAGAAGCCATGGTTATGGTCTCACTTGAGTTGAAAGGTTGTGGTGTACTGTCTGAAGCATCAGTTAATTGTCCACTCTTGACATCTTTGGATGCTTCCTTTTGCAGCCAACTCACTAATGAATGCTTGTCTGCAACAACTGCTTCATGCCCATTGATTGAATCATTAATATTGATGTCATGCTCATCAATTGGTTTGGATGGACTTTGTTCTTTGCAGCGGCTCCCAAATTTGACCCTACTGGATCTGTCATATACTTTTTTGGTCAATTTGCATCCTGTTTTTGAGTCTTGTACGCAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCGTCACTTGAACCCCTCTACAAGAGGGGTGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGCAACACTGTGTCAATCTGCTATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACATGTGAACTTGACTGGCTGTGCCAATATGCATGACTTAAATTGGGGATGTAGTCGGGGGCATATTGCTGGTGTAAATGTGTTATCCATTACAAGTTCTTATGAAAATGTCCATGAGCTAAGTGAGCAACCCACTCGATTGCTGCAGAACTTAAACTGTGTGGGATGTTTGAACATTCGGAAAGTTTTCATTCCATTAACGGCACATTGTTCCTGTTTGTTGTTTTTAAACCTTTCTCTATCAACTAATTTGAAAGAGGTTGATGTTGCTTGTCTCAACCTAAGCTGGCTTAACCTAAGCAATTGTTACTCTTTGGAAGTTTTGAAGCTAGATTGTCCAAGATTGACCAGTCTATTCCTCCAGTCTTGCAACATTGATGAAGAAGCAGTAGAGGCTGCTATATCCAAATGCACTATGCTGGAGACTCTTGATGTCCGCTTCTGTCCGAAGATTAGCTCAATGAGCATGGGAAGATTGCGTGCAGCATGTTCTAGTTTGAAGCGTATATTCAGCAGCTTGTCAACTTCATAA 2919 0.4334 MKLWCCLCFTEEEQDNLNLMKEEDISENDVVPAVGAIAVSDHDANDNREDGRFAMAPVPPRAETLVSWSGECSAAACSDSTVAGGVESRDLSHKRAKFYADFEERFFSTNAGKCGASNECRDYDYIKDSLRPNGETCCDTFALMGAGEDCGFDSGIVEDGEGDSSDILKVEDVEVRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRSASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGSAIYLLVMRAISSLRNLEALTLGRGQIADTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCPNISLESVRLPMLTVLKLHSCEGITSASMAAIAHSDMLEVLELDNCSLLTSVSLDLPHLQTIRLVHCRKFADLNLRTMMLSNILVSNCPALHRINITSNSLQKLALQKQESLTTLALQCQSLQEVDLSECESLTNSICDVFNDVGGCPMLKSLVLANCESLTSVRFFSTSLVSLSLADCRAITSLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMVMVSLELKGCGVLSEASVNCPLLTSLDASFCSQLTNECLSATTASCPLIESLILMSCSSIGLDGLCSLQRLPNLTLLDLSYTFLVNLHPVFESCTQLKVLKLQACKYLTDSSLEPLYKRGALPALQELDLSYATLCQSAIEELLSCCTHLTHVNLTGCANMHDLNWGCSRGHIAGVNVLSITSSYENVHELSEQPTRLLQNLNCVGCLNIRKVFIPLTAHCSCLLFLNLSLSTNLKEVDVACLNLSWLNLSNCYSLEVLKLDCPRLTSLFLQSCNIDEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAACSSLKRIFSSLSTS* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0393 972 PANTHER OS10G0396666 PROTEIN 87 933 - -
Pvu1g0393 972 Gene3D Ribonuclease Inhibitor 727 902 IPR032675 -
Pvu1g0393 972 Gene3D Ribonuclease Inhibitor 171 419 IPR032675 -
Pvu1g0393 972 Gene3D Ribonuclease Inhibitor 420 581 IPR032675 -
Pvu1g0393 972 Gene3D Ribonuclease Inhibitor 582 726 IPR032675 -
Pvu1g0393 972 SUPERFAMILY RNI-like 423 643 - -
Pvu1g0393 972 Pfam F-box-like 181 221 IPR001810 GO:0005515
Pvu1g0393 972 ProSiteProfiles F-box domain profile. 173 219 IPR001810 GO:0005515
Pvu1g0393 972 Gene3D Ribonuclease Inhibitor 903 970 IPR032675 -
Pvu1g0393 972 SUPERFAMILY F-box domain 178 209 IPR036047 GO:0005515
Pvu1g0393 972 SUPERFAMILY RNI-like 649 966 - -
Pvu1g0393 972 SMART fbox_2 179 219 IPR001810 GO:0005515
Pvu1g0393 972 SMART LRR_CC_2 286 309 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 933 968 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 792 827 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 350 375 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 691 716 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 469 494 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 767 791 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 423 448 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 602 627 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 665 690 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 908 932 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 376 401 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 560 590 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 739 764 IPR006553 -
Pvu1g0393 972 SMART LRR_CC_2 532 556 IPR006553 -
Pvu1g0393 972 PANTHER OS10G0396666 PROTEIN 87 933 IPR044703 GO:0010252|GO:1905393
Pvu1g0393 972 SUPERFAMILY RNI-like 200 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0393 Pvu-Chr1 3832474 3843295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0393 - - gmx:100782842 1657.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0393 1 3832474 3843295 Pvu1g0393 1 3832474 3843295 ECH