Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0370 ATGGCTTTGAGGCTTTTGATATCGCAGGTTGCAAGACGACAATCCAAATTTGGGCAGATTCAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAGTAAGTTTAGACATGGTGCAGGGAATAGGTTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGCTACCTTGGCAGTATAGCTCGTCGAGCGCGTGATGCAGATGAAGCCGCTGAAGTTGCTTATCTCAAAGAACTTTACCATCAGAATGATCCTGAGGCTGTCATTAGAGTATTTGAAAGTCAGCCATCTTTGCATAATAGTCCCTCGGCTCTTTCTGAATACGTGAAAGCACTGGTGAAAGTTGATAGGCTTGATGAAAGTGAATTACTGAAGACATTAAGGAGAGGCATGTCCAATTCAGCAGTGAATGAGGAAGAAACTGTAGCTGGTCTTTCTGCTTTAAGAAATTTAGGAAAATCGACAAAAGATAATATTATTGGAACTTCTAGCAATCCAATCCATATGGTGGCTAGAGAAGGTGGGAATATAAAAGATCAGCTATGGCGTACACTCAGGTCCATTGCGGTGGTCTTTTTCTTGATTTCTGGCGTAGGAGCACTCATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCTAGCATGGAATCAACCACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCATTACCTTCGAGATCCTAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCAAAAGGAGTTTTGCTTGTTGGTCCACCTGGTACTGGAAAAACAATGTTGGCTAGAGCTATTGCTGGTGAGGCTGGGGTTCCGTTCTTCTCCAGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCGCGAAGGGTGAGGGATCTTTTTGCTGCTGCAAGGAAACGAGCACCTTGTATAATATTCATTGATGAGATTGATGCTATTGGAGGAAGCCGACACCCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGGTTCAAGCAAAATGAGGGAATAATTGTGATTGGTGCAACTAATTTTCCAGAATCATTGGACAATGCACTGGTGAGACCTGGGCGGTTTGATCGCCATGTTGATGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTCTGGAATCACACATGTCAAAGGTTTTGAAGGCTGATGATGTTGATCTAATGATCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACATGGCTGCTATCAAGGCTGCAATGGATGGTGCCAAAGCTGTGACCATGGCTGATTTAGAGCATGCAAAAGACAAGATGCTAATGGGCAGTGAACGCAAGTCAGCTGTCGTATCTCCGGAGCAACGAAAGTTGACTGCTTTCCATGAGGGTGGTCATGCCCTTGTTGCCATTCATACTGATGGGGCCCTCCCTGTTCACAAAGCAACTATAGTTCCCCGCGGTATGGCTCTTGGCATGGTAATGCAATTGCCGGATGCCGACGAGACCAGCAGTTCCCGTAAACAGATGCTTGCCAGGCTTGATGTTTGCATGGGAGGCCGGGTAGCCGAAGAGCTAATTTTTGGAGAAAATGAAGTCACTTCTGGTGCATCCTCAGATCTCAAGCAAGCAACTAGTTTGGCAAGGGTGATGGTTACCAAATATGGCATGGGCAGTGAAGTTGGACTAGTCACACACGATTACAAAGATGATGGGAGGAGCATGAGCTCAGAGACAAGGCTTCTCATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCTTACAACAATGCAAAAACCATTCTCACCACTCACAACAAGGAGCTACATGCACTTGCACATGCTCTTTTGGAGCACGAGACCCTCACAGGAACTCAGATAAAGACATTGCTTGCCGAAGTTAGAACTCAGATGCAGCAGCAGCCTCAAACAGTTGAAGCTCAGAGCAGTTCACAATCCAACACAGTGCCTCCACCATCCACCAACCCGGCATCTGCTGCTGCTGCCGCTGCAGCCGCCGCTGCCACAGCTGCAGCCACAGCTACTGCGGCTGCCGCCAAGGCTAAAGGTGCTCCAGTGGGATCTTAG 2154 0.4596 MALRLLISQVARRQSKFGQIQSVFATSYFSVSKFRHGAGNRFLGAQERFQSSYLGSIARRARDADEAAEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESELLKTLRRGMSNSAVNEEETVAGLSALRNLGKSTKDNIIGTSSNPIHMVAREGGNIKDQLWRTLRSIAVVFFLISGVGALIEDKGISKGLGINEEVQPSMESTTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSSSGSEFEEMYVGVGARRVRDLFAAARKRAPCIIFIDEIDAIGGSRHPKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPESLDNALVRPGRFDRHVDVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLINMAAIKAAMDGAKAVTMADLEHAKDKMLMGSERKSAVVSPEQRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVMQLPDADETSSSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLKQATSLARVMVTKYGMGSEVGLVTHDYKDDGRSMSSETRLLIEKEVKQFLERAYNNAKTILTTHNKELHALAHALLEHETLTGTQIKTLLAEVRTQMQQQPQTVEAQSSSQSNTVPPPSTNPASAAAAAAAAAATAAATATAAAAKAKGAPVGS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0370 717 Pfam ATPase family associated with various cellular activities (AAA) 261 390 IPR003959 GO:0005524|GO:0016887
Pvu1g0370 717 Gene3D - 392 465 - -
Pvu1g0370 717 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 8 688 - -
Pvu1g0370 717 SUPERFAMILY FtsH protease domain-like 472 659 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu1g0370 717 Gene3D - 209 391 IPR027417 -
Pvu1g0370 717 MobiDBLite consensus disorder prediction 660 689 - -
Pvu1g0370 717 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 1 682 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu1g0370 717 MobiDBLite consensus disorder prediction 660 684 - -
Pvu1g0370 717 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Pvu1g0370 717 Gene3D Peptidase M41 466 664 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu1g0370 717 PANTHER METALLOPROTEASE M41 FTSH 8 688 - -
Pvu1g0370 717 CDD AAA 258 390 - -
Pvu1g0370 717 Pfam AAA+ lid domain 413 456 IPR041569 -
Pvu1g0370 717 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 213 653 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu1g0370 717 Pfam Peptidase family M41 472 652 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu1g0370 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 486 IPR027417 -
Pvu1g0370 717 SMART AAA_5 257 393 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0370 Pvu-Chr1 3489572 3501729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0370 61 653 Miscellaneous Gene Families AT5G53170 50.891 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0370 K08955 - gmx:100776957 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0370 1 3489572 3501729 Pvu1g0370 1 3489572 3501729 ECH