Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0352 ATGAGTTCCATTTCTGATCCTTCCATAGACACAACAACAGCAACACCCATCGTCACCTCGGATTCCCAGGGTTTGTCAGATTCAAGGAGAATAGGTGAACGTGTGTGTGCAGCGTTGATGCCATTGATGGTGGTTGTTGAGGTTTTGATGTTGCCTGTCACAGGTTGTTTGGGTTATTGCTCAAGCAGCATTATGCAGAAGCACAAACGTTGTTCCTACACTGCTAAGGACTTCGCAACCCTAGCTTCTGCAACAACATTCACAGTTAAGGAAGTGGAGGCATTGCATGTGTTGTTTAAGAGGTTAAGTAGCTCCTTAATCGATGATGGTTTTATTCACAAGGAGGAGCTTCAATTGGCATTGTTTCAGACCCCAAACGGAAAAAATCTTTTCCTAGATCGAGTGTTTGATGTTTTTGACCAAAAAAGAAATGGTGTAATTGAGTTTGACGAATTTGTCCTTGCACTCAGTGTTTTCCATCCAAATGCACCTATAGATGAAAAAATTGATTTTGCATTTAAGCTCTATGACCTCAGTCAAACTGGATTTATTGGACGAAAGGAAGTGAAGCAAATGGTTGTAGCCATTTTGATTGAATCAGACATGAATATTCCTGATGATCTTCTTGAAGCTATGGTTGACAAGACAATTGCTGATGTGGATAAGGACAGTGATGGTAAAATCAGTAGAGAAGATTGGAAAGCTTTTGTGAGTCAAAATCCATCCCTCTTGATGAACATGACACTTCCTTATTTGAAGGATATCACCACTGTGTTTCCAAGTTTTTTTTTCACCATGGAAGAAATTTAA 810 0.3975 MSSISDPSIDTTTATPIVTSDSQGLSDSRRIGERVCAALMPLMVVVEVLMLPVTGCLGYCSSSIMQKHKRCSYTAKDFATLASATTFTVKEVEALHVLFKRLSSSLIDDGFIHKEELQLALFQTPNGKNLFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPNAPIDEKIDFAFKLYDLSQTGFIGRKEVKQMVVAILIESDMNIPDDLLEAMVDKTIADVDKDSDGKISREDWKAFVSQNPSLLMNMTLPYLKDITTVFPSFFFTMEEI* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0352 269 SMART efh_1 168 196 IPR002048 GO:0005509
Pvu1g0352 269 SMART efh_1 212 240 IPR002048 GO:0005509
Pvu1g0352 269 SMART efh_1 131 159 IPR002048 GO:0005509
Pvu1g0352 269 PRINTS Recoverin family signature 135 156 - -
Pvu1g0352 269 PRINTS Recoverin family signature 182 200 - -
Pvu1g0352 269 PRINTS Recoverin family signature 228 248 - -
Pvu1g0352 269 MobiDBLite consensus disorder prediction 1 25 - -
Pvu1g0352 269 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Pvu1g0352 269 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
Pvu1g0352 269 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Pvu1g0352 269 CDD EFh 168 238 IPR002048 GO:0005509
Pvu1g0352 269 Pfam EF hand 132 152 IPR002048 GO:0005509
Pvu1g0352 269 PANTHER CALCINEURIN B 23 266 IPR045198 GO:0005509|GO:0019722|GO:0019900
Pvu1g0352 269 ProSiteProfiles EF-hand calcium-binding domain profile. 208 243 IPR002048 GO:0005509
Pvu1g0352 269 Pfam EF-hand domain pair 167 236 IPR002048 GO:0005509
Pvu1g0352 269 ProSiteProfiles EF-hand calcium-binding domain profile. 127 162 IPR002048 GO:0005509
Pvu1g0352 269 Gene3D - 77 268 - -
Pvu1g0352 269 PANTHER CALCINEURIN B-LIKE PROTEIN 10 23 266 - -
Pvu1g0352 269 SUPERFAMILY EF-hand 79 263 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0352 Pvu-Chr1 3357230 3362370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0352 83 268 EF-hand Containing Proteins AT5G24270 63.978 4.33e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0352 K06268 - gmx:100810494 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0352 1 3357230 3362370 Pvu1g0352 1 3357230 3362370 ECH