LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0274	ATGAAATGCGTGGAGAACACACGGGACTCGTGCAACTGCGTCGTGAGTCAAGTCCTGCCGTCACTCGCCATGGCCTCGGTGGAGCAGCCTCCAAAGAAGCGAAAGCTTTACGAGCCTTTACTAGAACCGCCACCGTCTTCGCCTCCGTCACCACCACCGCCGGCAACCGAACCAACCCCTCCCTCTCCGCAAACCCTACCCCCGCCGTCTCAGGAGGAGATTCTCGCGAAGCGGCGGAACAAGGACGAAATTCGAAGCGTCTTCGAAGGTTACAAGCGGATTCAACGTTGCTTGCTTAACAAAGACGCTCCTTCCTCTATGGCAGACCTTGAAAAGAGTTATCTCGCGCTCATAACTTCTTCCAGAGGTTGTATGAGTGTTCAAAGAATTGTGGCCAATCTTATTCCTCGGTATGCATGTCACTGTCCAACAGCCTTGGAAGCAGCAGCTAAAGTTGTTATTAATATGCACAACTTTAGTTTGGCATTGATTAGTAGAGGAGAGGATTCCAGTGGTATTGCATTTGAAACTGCTAGAGCTTGTATTTGTGGCCTTGCTGATGTGTGCTGTGTTGGTTCATCGGTGGCACCAACGTCTGCTGTAATTAAAGGAATTTGCTCAGCAGTTTTTCAGAATGTGCTCACCTCTTTTATAGCCTTATTTGAAGGAAAGGATATCTTACAGATGGTCGACAAGAGTTTCCTGAATATGCAAGATAACCCTGAGGTCTTTTCTGAGTTGAAACAGAAAGTTTTAGAGGAGGATGAATCTCCATTGACTAAACTGTCCAAGTTTCGAGTATTATGTCTACTTTGGATTTTTTTCTCGTGTCCAAAAGATTTGCTTGCAGCTTGTTTGGATCTCTTAGGTTCTGCCACAAAAGAGGGAACTAACAATGAAGGACAGCATTTTTTGAGCCTGGTGACTAGCTTGTTTGATGATGATAAAACAGTTCACCTTTTAGATAACACAATTAGTGGACCTAAGTCTTGTACGGATTCTACTGGGTCTGGAATCAGAGATGATGAGGCTGGTGAGGAAGTTGTGACTGAAGGCAACTATGTTTCTGGTGGTGATTCATCTGTTGGCAAGAGCTGCTTACTTATACGGGTTCTTGACAGGAATCCCCCACTCCGGAAATGGATGTTGTGTAGATGTAAGAAGTTACTTGACTTGCTCCCAAATGCATCACTGGAAATTATGTCAGTACTGCAAGGAATTCTTGGAATGTTTCCTCAACAAACAGATTTGGAAGACTGTCAAGCAGATAGTGATGAAGATAAATCCGAATCTTCAATTTACATGAATAGTAGGAAGTACATGGTGCCTAGAAGCTCCGAGGAACATGAAAGCATTGCTGAATCATCTGGAAAAGGAGGCAATTTGAGAGTTTATGTTGGTTCTACTGATGGTTTTACTGATAAGGTTTCTGATAAATATGTGATGGCTCATAGCTCTGCAGTTTCTCTTGACAATAGTCCAGCGTTAAAAGTGGGTTTGCATTATGATAATGGAGTCTCAAAGCCCATTAGCATTGGGGTCGGGGAAGAAGGAAATATGCCAAATGTTAAATGTTCCACACCTAGGGACTCAGTAAGCCATCAAATATTCTCACCTGCAGTTAGAACACCGGGGAATTTTAGGAGTAATTCATTTGATGGTAGAAATGATTTCCTGAATGTAGAGAAAAATCAAGTCTCAAGCATGAATTTCAGTTCACCTCCATTGAGATCGTCTAGTGGATCTGTTAGTAATTCTTTGGCATCTCCTAATCATCATTTTATGTCACCAACTGCTTCAACAAAAAGTCAAATTGTGTGGTGCTGTGATGGGGATCCTGCTGCCATGGATATTGTCTCTGCTTCTAGGCTGCTATGGATAGGTTATGTGGGCCCTGATGTGCCCGAAAGTCATATTAGGTTTCACCTAGAAAGATTTGGTCCTATTGAAAAATTTATTTTCTTCCCAGTTAAAGGCTTTGCCTTGGTCGAATACAGAAGGATCATTGATGCAATAAAAACTCGACACTGTTTACCTGGATGTTTTCCTTGCCGTGTAAAATTCATGGATGTAGGACTTGGAACTAGGGGTGCAATGAGTGGTGTTGCAGTTGGCTCTAGTTCTCATATTTTTGTTGGAAATATTCCTAGTCAATGGGCCAAGGATGAGGTCATGCATGAAACAAGAAAAATGATCCACAAGGGTCCTCTTGCATTCATTGATCTTAGCTGTGAGTTTGCATTACTAATGGAATTTGAAACGCCTGAAGAAGCTACAGCTGTCATGTTGCATCTGAGACAAATGCGAAGAGAAAGAAGTAACTACAACCAGCATTTTGGTCCAGCTCCAGGAACAGGTAATGTTGGAATTGGGCATGCTTATATGGATGGTGCAAGACCTGTACCTGCCCCACCCCCTCCCCCTCCCCATCTTGATCTTCAAGTTAACAACTCTGCTGGATCACCACATGCTCGAACTCTACCAGGGAGCCCCGCTGATAGCAGTCGAACGGTGATGTCTCACCTGTCCACCTTACTTTCTTCATTGTGCTCAAAGTACAATATTAATCAAAACCTAGGTCTCAATGATAATTACATGACTGGCAATAATTTTCCTTCCATGCGTGAGGAAGATATGGTGCCATCCAGCACTCTGTGCATAACTATTCCACATTGTAGCAGTTCTATGTTCCTTTCGGATGATGAGTTAATGGCCATTTGCAATCTTGCCATTGGGAATGCTGGATCCATTGTCCAGTTGACACAAGCAAGCACGCAGATGGGATGTAGTTGGTTTGTCGAATGCAGTAATATTGAAGGAGCAGTTTCTGCGCTAAAGAATCTCCGTTGTTGTCCAGGATTGTTCTTCCAGATAGAATTCAGCAAACCTGGACATCAGAACACTGTACCATTTTCAGTTAAACCAGAGATGAATTGTATGGAGCTTGTATCCCCCAGAATAATTTCTGAAAATCATACTAGTGGAATGCAGAGTGCACCTCTGCCTCATTCAAACTGGCACTTTCCTGGTTCTAGGGAGATGTCAGAGGTTGGAGCAAGGAAACCTGATGGTTATGATAATTTGTCACAGGATCCTCATCAAGGAGGTAATGTTCCACATTCACACTCTGGAGCGCATGCACCTTCCATCCCACCACTGCAGCAAATTCAGTCATCTACTTTTGTTCGCCCTGTTTATGCTCCTCCAAATGGTCCATGGGATCATCGGGGAATAAATAATCATTTACATGTCAGCCAATTGAACACAGGAGTAATGCCAAATAATTTTCATGGTAATGCTGTTGTAAGTCCATTTATTCCTGCTTCAGTGACTCCACTTGCTCAGATACAAGGAACTCCAATGCATCCTTATAACCAGCAGGTGCCTCCATCAATTGTACCACCGCCTTTATCATCCTTGCCACCGCCTCAGCCTGAAATGCCACCTCCACTACCTCCTTCTCCACCACCTTTACCCCAGGTTCAGCCTCCTTTGGTTCCTCCACTGCCTAGTTCTCCTCCTCCCCCTCCTCCTCCGCCAGTGCCTGTCCAAGAACCAGTCAATATGGAATGTTCAGAGCAGTCTTTGCAGTATCAATGGCAGGGGAATCTATGTAAAAGTGGGGTCAATTACTGCAAAATTAATGCATGCAAGGCAGATTCAAATATTTGCCGATATTCAAATGCCATACCTGAGCCTGCTGAGTGGACCACAAAATTAGACATGACAAAACGCACAGATCTTCGACATGTAAAATCAACATTTGCTGCTACTCCATCTCATAGAAGGGAAGTGTGCCGTCTGATCCCATCTTCCACTAGTGATCTCAGAAGGTTTCAGGATTTCGTATCATACTTAAAGCAGAGGGACTGTGCTGGGGTTATTAAAATCCCAGCTTCAAAATCCATATGGGCAAGGCTGCTTTTCATTCTCCCCCACTCACTTGAAACCTGCTCTCTGCTTTCTATTGCCCCTGATCCCTCAGATTGCCTCATTGCTTTGGTTCTTCCCAAAGAAACAAACTTTGAGTGGATATGA	4038	0.4388	MKCVENTRDSCNCVVSQVLPSLAMASVEQPPKKRKLYEPLLEPPPSSPPSPPPPATEPTPPSPQTLPPPSQEEILAKRRNKDEIRSVFEGYKRIQRCLLNKDAPSSMADLEKSYLALITSSRGCMSVQRIVANLIPRYACHCPTALEAAAKVVINMHNFSLALISRGEDSSGIAFETARACICGLADVCCVGSSVAPTSAVIKGICSAVFQNVLTSFIALFEGKDILQMVDKSFLNMQDNPEVFSELKQKVLEEDESPLTKLSKFRVLCLLWIFFSCPKDLLAACLDLLGSATKEGTNNEGQHFLSLVTSLFDDDKTVHLLDNTISGPKSCTDSTGSGIRDDEAGEEVVTEGNYVSGGDSSVGKSCLLIRVLDRNPPLRKWMLCRCKKLLDLLPNASLEIMSVLQGILGMFPQQTDLEDCQADSDEDKSESSIYMNSRKYMVPRSSEEHESIAESSGKGGNLRVYVGSTDGFTDKVSDKYVMAHSSAVSLDNSPALKVGLHYDNGVSKPISIGVGEEGNMPNVKCSTPRDSVSHQIFSPAVRTPGNFRSNSFDGRNDFLNVEKNQVSSMNFSSPPLRSSSGSVSNSLASPNHHFMSPTASTKSQIVWCCDGDPAAMDIVSASRLLWIGYVGPDVPESHIRFHLERFGPIEKFIFFPVKGFALVEYRRIIDAIKTRHCLPGCFPCRVKFMDVGLGTRGAMSGVAVGSSSHIFVGNIPSQWAKDEVMHETRKMIHKGPLAFIDLSCEFALLMEFETPEEATAVMLHLRQMRRERSNYNQHFGPAPGTGNVGIGHAYMDGARPVPAPPPPPPHLDLQVNNSAGSPHARTLPGSPADSSRTVMSHLSTLLSSLCSKYNINQNLGLNDNYMTGNNFPSMREEDMVPSSTLCITIPHCSSSMFLSDDELMAICNLAIGNAGSIVQLTQASTQMGCSWFVECSNIEGAVSALKNLRCCPGLFFQIEFSKPGHQNTVPFSVKPEMNCMELVSPRIISENHTSGMQSAPLPHSNWHFPGSREMSEVGARKPDGYDNLSQDPHQGGNVPHSHSGAHAPSIPPLQQIQSSTFVRPVYAPPNGPWDHRGINNHLHVSQLNTGVMPNNFHGNAVVSPFIPASVTPLAQIQGTPMHPYNQQVPPSIVPPPLSSLPPPQPEMPPPLPPSPPPLPQVQPPLVPPLPSSPPPPPPPPVPVQEPVNMECSEQSLQYQWQGNLCKSGVNYCKINACKADSNICRYSNAIPEPAEWTTKLDMTKRTDLRHVKSTFAATPSHRREVCRLIPSSTSDLRRFQDFVSYLKQRDCAGVIKIPASKSIWARLLFILPHSLETCSLLSIAPDPSDCLIALVLPKETNFEWI*	1346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0274	1345	PANTHER	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100	24	1344	-	-
	Pvu1g0274	1345	PANTHER	NUCLEIC ACID BINDING PROTEIN	24	1344	-	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	1127	1183	-	-
	Pvu1g0274	1345	Pfam	SPOC domain	1193	1336	IPR012921	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	26	70	-	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	1118	1183	-	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	814	836	-	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	798	836	-	-
	Pvu1g0274	1345	SUPERFAMILY	RNA-binding domain, RBD	612	682	IPR035979	GO:0003676
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	1004	1051	-	-
	Pvu1g0274	1345	MobiDBLite	consensus disorder prediction	41	68	-	-
	Pvu1g0274	1345	Gene3D	-	614	693	IPR012677	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0274	K18667		-	gmx:100798033	1785.39

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0274	1	2486688	2498473	Pvu1g0274	1	2486688	2498473	ECH