Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0221 ATGACTGTGATGCTCCCTCATCCCAGAAAGATACCCCCGTCGCGTGACAAAAACTTACCTGTGCATCTGCAGAAAATAATGAAAAAGTTGAGAGAAGCAGACAGAGACAACAATGGTTCCTTCAACAAGAGTGAACTCAAGCATGCCCTCAAAGACTTAGGTGCCTACTTCCCTGGCTGGAGAGCTGACCGTGCTTTCGGAAAAATTGATGTCAACAACGACGGTCTAATTAGCGGCGAGGAAATCGATTCTCTCCTTGAGTATCTTGGTTCTTGTGGCTTTGGAAAATGA 291 0.457 MTVMLPHPRKIPPSRDKNLPVHLQKIMKKLREADRDNNGSFNKSELKHALKDLGAYFPGWRADRAFGKIDVNNDGLISGEEIDSLLEYLGSCGFGK* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0221 96 Gene3D - 10 90 - -
Pvu1g0221 96 ProSiteProfiles EF-hand calcium-binding domain profile. 61 92 IPR002048 GO:0005509
Pvu1g0221 96 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Pvu1g0221 96 SMART efh_1 61 89 IPR002048 GO:0005509
Pvu1g0221 96 SMART efh_1 25 53 IPR002048 GO:0005509
Pvu1g0221 96 SUPERFAMILY EF-hand 20 83 IPR011992 -
Pvu1g0221 96 PANTHER - 14 88 - -
Pvu1g0221 96 ProSiteProfiles EF-hand calcium-binding domain profile. 21 56 IPR002048 GO:0005509
Pvu1g0221 96 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 14 88 - -
Pvu1g0221 96 Pfam EF-hand domain pair 24 82 IPR002048 GO:0005509
Pvu1g0221 96 CDD EFh 29 81 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0221 Pvu-Chr1 1841099 1841764 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0221 - K02183 vra:106764438 122.864