Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1730 ATGGCCTTTCAAAGACTAGCTTCCATCATACTTCTCTTATCCCTTTTCACCATCTCTTACTCACACCGTGACAATGGCGGAATTGCTGTGTACTGGGGCCAAGACGCGCGAGAAGGTGATTTGGTAACCGCATGTAACAGTGGAAAGTACAAGATTGTACTCCTTGCTTTCCTCAACAAGTTCGGTGCAGGGAGAACCCCAGAATGGAACTTCGCCGGTCACTGCGACAATGGTGCCTGGAAAAAGTGCACCGAACTAGAGCCCGAAATAAAACAGTGCCAGGCGAGAGGCATCAGAGTTCTCCTTTCAATCGGAGGAGCCCCTGACTATTCAAGCTACTTGCTGAGCTCGCCGGAGGACGCAAAGGAGGTGGCCAACTACCTCTACGAAAACTTCCTCAGTGGCCAATATGGTCCACTGGGAAGCGTCACGTTGGACGGAATCGACTTCGACATCGAAGTGACGGAGGATTACTGGGACGACCTTGCCAGGGAACTCGACTTCTTCCGACGAACGACGGGGCGTTACTTTTACTTGTCCGCCGCCCCTCAGTGCCCAATCCCAGTCTACTATCTCGGCAAAGCTATCGCCACCAAACTCTTCGACTACATCTTCGTTCAGTTCTACAACAACCCTAGTTGCTCCTACGTCAGTGGCACCAACGCCCTCTTGAACTCCTGGGACAAGTGGGTCGACTTGGTCCCCTCCAACAACTCGCTCTTCGTGGGCCTGCCAGCGGCGCCCAGCGCCGGCAACGGTTACATTCCGGCGGAGGTGATGAACGGCCGGGTGCTTCCGCACGCGAAGAAAGCCTCGAATTACGAGGGAGTGATGCTGTGGGATAGATACCGCGATGTTCAGAATGGTTACAGTGATAAGATACATTCGAATGTGATTAAGTCGAAGTTGCCGGCGTCTGTGGAGTCAGTTACCGACGCAATTTACCAGTCCGTGTATAAGGCGTTGCGCCGCGTCTTCGTTTAA 984 0.5315 MAFQRLASIILLLSLFTISYSHRDNGGIAVYWGQDAREGDLVTACNSGKYKIVLLAFLNKFGAGRTPEWNFAGHCDNGAWKKCTELEPEIKQCQARGIRVLLSIGGAPDYSSYLLSSPEDAKEVANYLYENFLSGQYGPLGSVTLDGIDFDIEVTEDYWDDLARELDFFRRTTGRYFYLSAAPQCPIPVYYLGKAIATKLFDYIFVQFYNNPSCSYVSGTNALLNSWDKWVDLVPSNNSLFVGLPAAPSAGNGYIPAEVMNGRVLPHAKKASNYEGVMLWDRYRDVQNGYSDKIHSNVIKSKLPASVESVTDAIYQSVYKALRRVFV* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1730 327 Pfam Glycosyl hydrolases family 18 28 280 IPR001223 GO:0005975
Pvu11g1730 327 PANTHER ENDOCHITINASE 9 295 - -
Pvu11g1730 327 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 301 IPR001223 GO:0005975
Pvu11g1730 327 CDD GH18_hevamine_XipI_class_III 26 296 IPR045321 -
Pvu11g1730 327 SUPERFAMILY (Trans)glycosidases 24 293 IPR017853 -
Pvu11g1730 327 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Pvu11g1730 327 Gene3D Glycosidases 24 313 - -
Pvu11g1730 327 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 9 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1730 Pvu-Chr11 43645622 43646833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1730 21 298 Glycoside Hydrolase AT5G24090 50.530 3.60e-93 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1730 K01183 - gmx:547449 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1730 11 43645622 43646833 Pvu11g1730 11 43645622 43646833 ECH