Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1660 GAGAAATTCTCTCTCCCTCTCTTTAGAAACCCTATTGCGCGCTTTGCAATCCAGCTCCACAATGGCCAACAGCAATCTTCCTCGAAGAATCATCAAGCTCCTGGAATTAGCGCTTCCCCTTCCGAAGACAATATGAGATATTTCAATGTGATGATCCTTGGGCCAACCCAGTCACCTTACGAAGGAGGAGTATTTAAGTTAGAACTATTTTTGCCAGAAGAATATCCGATGGCTGCTCCGAAGGTTCGGTTTCTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGAATATGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCTCTTCAGATTCGTACTGTTCTATTAAGCATTCAAGCTCTATTGAGCGCACCAAACCCAGATGATCCACTTTCTGAAAACATTGCCAAGCATTGGAAATCTAGTGAGGTCGAAGCTGTTGAAACAGCGAAGGAATGGACCCGATTATATGCTAGTGACGCCTGA 495 0.4283 EKFSLPLFRNPIARFAIQLHNGQQQSSSKNHQAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSSEVEAVETAKEWTRLYASDA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1660 164 Pfam Ubiquitin-conjugating enzyme 27 156 IPR000608 -
Pvu11g1660 164 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 89 104 IPR023313 -
Pvu11g1660 164 Gene3D Ubiquitin Conjugating Enzyme 17 164 IPR016135 -
Pvu11g1660 164 CDD UBCc 34 157 IPR000608 -
Pvu11g1660 164 SMART ubc_7 19 162 - -
Pvu11g1660 164 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 162 IPR000608 -
Pvu11g1660 164 PANTHER BNAC02G25260D PROTEIN 31 161 - -
Pvu11g1660 164 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 31 161 - -
Pvu11g1660 164 SUPERFAMILY UBC-like 30 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1660 Pvu-Chr11 42053369 42059077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1660 40 129 Miscellaneous Gene Families AT3G17000 31.250 2.47e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1660 K10580 - sly:101266538 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1660 11 42053369 42059077 Pvu11g1660 11 42053369 42059077 ECH
Pvu5g0692 5 10337065 10345393 Pvu11g1660 11 42053369 42059077 PCT