Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1636 ATGGCCACACTCTTCGACTCTCTCGCCGTCGTTCGCCTCCCTTCCGCCGCCATCTCCCCCGTCGCCGCTCGCCCCACCTCCGCCAAGCTCCCGCAGTGCATCGGCCTCAGACTCAGACCAACCGCCGCGCGATTCGTGGCAGCCTCGGCTCCCAGAATCGCTACGCACGCCGTGCGCGTTGTGTGCAAGGCTCAGGATACCGCCGTCGATGTGGCTCCTATAACTGATGCAAATTGGCAATCCCTTGTCCTTGAATCTGATTCTGCTGTTCTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGAATGATTCACCCTATAATTGATGAGCTTGCAAAGCAATATGCTGGAAAGCTCAAATGTTACAAACTCAACACTGATGAGAGCCCTTCAACTGCAACTCGGTATGGAATTCGAAGCATTCCCACTGTTATGATCTTCAAGAATGGCGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACGTTGACCACAAGCATAGAAAATTTCGTTTGA 525 0.5314 MATLFDSLAVVRLPSAAISPVAARPTSAKLPQCIGLRLRPTAARFVAASAPRIATHAVRVVCKAQDTAVDVAPITDANWQSLVLESDSAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIENFV* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1636 174 CDD TRX_family 77 171 - -
Pvu11g1636 174 PRINTS Thioredoxin family signature 90 98 - -
Pvu11g1636 174 PRINTS Thioredoxin family signature 98 107 - -
Pvu11g1636 174 PRINTS Thioredoxin family signature 138 149 - -
Pvu11g1636 174 PANTHER THIOREDOXIN M-TYPE PROTEIN 2 174 - -
Pvu11g1636 174 ProSitePatterns Thioredoxin family active site. 91 109 IPR017937 -
Pvu11g1636 174 Gene3D Glutaredoxin 71 174 - -
Pvu11g1636 174 SUPERFAMILY Thioredoxin-like 62 173 IPR036249 -
Pvu11g1636 174 TIGRFAM thioredoxin: thioredoxin 75 173 IPR005746 GO:0015035
Pvu11g1636 174 Pfam Thioredoxin 71 171 IPR013766 -
Pvu11g1636 174 ProSiteProfiles Thioredoxin domain profile. 62 174 IPR013766 -
Pvu11g1636 174 PANTHER GEO12009P1 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1636 Pvu-Chr11 41576456 41578571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1636 K03671 - gmx:100818054 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1636 11 41576456 41578571 Pvu11g1636 11 41576456 41578571 ECH
Pvu5g0737 5 11800621 11803897 Pvu11g1636 11 41576456 41578571 PCT