Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1573 ATGGCCAAAACCTCCTTCAAGCGTCAACATCCCTTGGAAAGAAGGCAGGCCGAAGCTTCTCGCATTAGAGAGAAATATCCCGATAGAATACCTGTGATTGTGGAGAAAGCTGAAAGAACTGACTTTCCTGACATTGATAAGAAGAAATACCTTGTCCCTGCTGATTTGACTGTTGGCCAGTTTGTTTACGTTGTCCGCAAAAGGATTAAGCTCAGTGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACGCTACCTTCAACTGCTGCTCTGATGTCTTCTATTTATGAGGAAAATAAGGATCAAGATGGCTTTCTTTACATGACTTACAGTGGAGAGAACACCTTCGGATCCCACAAGGCATAA 366 0.4235 MAKTSFKRQHPLERRQAEASRIREKYPDRIPVIVEKAERTDFPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPSTAALMSSIYEENKDQDGFLYMTYSGENTFGSHKA* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1573 121 MobiDBLite consensus disorder prediction 1 20 - -
Pvu11g1573 121 Gene3D - 1 117 - -
Pvu11g1573 121 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Pvu11g1573 121 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Pvu11g1573 121 CDD Ubl_ATG8 12 114 - -
Pvu11g1573 121 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Pvu11g1573 121 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1573 Pvu-Chr11 39767506 39769438 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1573 K08341 - gmx:100784677 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1573 11 39767506 39769438 Pvu11g1573 11 39767506 39769438 ECH
Pvu11g1063 11 11625632 11627983 Pvu11g1573 11 39767506 39769438 ECH