Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1571 ATGGAGATGTCTTTGCAACTAAACTGCAAAACCGTGTTTCCCTACAGAAGCGGTTGTGTGAAGCCGAACTCGTTTCCTGGGGTGTTACCCCGTCGTTCTGTAACGTTTGGAATTGGTTACATGTGTTCCCCGTGCAAAGCAGGTTGGGGTGCTTCTTTCGTCCGTGCCAGTGCAGATTTTTCTCGGAGGAGGCAACAGAAGAAGGTGTCAGTTACAAGGCCAAAAGGCACTGCTGCAAAGGGTTTTGTCCCAAGCAAAAGAAATGCAAGATTGAAGAAGGGGGATTCAGTAACTCCTGTAGTCAGTGAGGTTTCAGGGGGGGATAAGAAACAAACAGTTGATGTGAATCTTGATGATGATAAAGAAGGGGGGGTTGAATTTTCGGAAGACGTGAGGTTTGAGGTTATAGATAGAACTGATGAAATCGTTGGGGATGTGGGGGAATTATTGTTGTTAGATGAGACGGTGAATGTTATTGAGAACAGTCAACCTAACATCTCTATAATTGATGAGGATGTTGAGGTTCTTGAGTTAAAAGAGGATATTCCTTACAATGGAGGTGTTGGGATTGTTGAAGATTCAGAAGAAGGGTTGTTGGATCGTGCAGAAATTGATGAAAATGTTAAAGATACAAATACTGATACTCTTGATGAAATAACCGAGGAAGCTGTTGAGGAATCAAGAACTGCTAATGATGATAGAATAAAGGAGGAAGCTTCTCGGCTGTTGAAGTTAGAGTTGGAAGAAAATCAGCGCCAGCAGGAGATAGAGAGGATTGCAGAGGAAAAACTTTCTCAAGGTACCAAGCTGTTTGTATATCCTCCTGTTGTTAAACCTGATCAAGATATAGAAGTTTTCCTTAATAAGAGCCTTTCAGCACTAAGTGATGAGCCACAGATTCTAATCATGGGGGCATTCAATGATTGGAAGTGGAAATCTTTTTCCGTTAAGTTGAATAAGACACGTCTCAAGGGAGATTGGTGGTCGTGCCAATTATACGTGCCAAGGGAGGCCTACCAGGTAGACTTTGTGTTCTTCAACGGACAAAATGTCTATGACAATAATGACCAAAAAGACTTCCGCATAGCCATTGAGGGAGGAATGGATGCATCAGCATTTGAAAATTTCTTACTTGATGAGAAACGTAAAGAATTAGAAGAACTTGCTAGGGTGCAAGCTGAAAGGGAAAGACAAGCTGAAGAGCAAAGGCGAATTGAGGCAGACAGAGCTGCAAAGGCAGAGGACAGGTCACGGGCGAGGGTGGAAGTTCAGAGAATGCAAGAAACATTACCGCAATTGTTGAAGAATGCTGTAAAATCAATTGATAATGTTTGGTATATTGAACCTAGTGATTTTAAAGGCAAGGACTTGATCAGATTATATTATAACAGAAGCTCAGGTCCTCTTGTACATGCTAATGAAATATGGATTCATGGTGGGCACAATAATTGGAAGTATGGATTATCAATCATTGAAAGGCTTGTCAAATCTGTTTTAAAAGGAGGTGACTGGTGGTATGCTGATGTTATTGTACCTGACCAAGCTCTTGTCTTGGATTGGGTCTTCGCTGATGGTGCACCTCAAAAGGCAGGTATTTATGATAACAATCGTAAACAAGATTTCCACGCTATTGTCCCTATGGTTACACCTGATGAACAGTATTGGGTTGAAGAAGAACAACTGCTATACAGAAAATTTCAGGAGGAGAGGAGGTTAAGAGACGAAGCTATGCGTCACAAGGCTGAAAAAATAGCACAAATGAAAGCTGAAACAAAGGAAAAAACTTTGAAAAGATTTTTGCTTTCTCAAAAGCATATTGTATTCACGGACCCTCTTGATGTTCAAGCAGGGAGTACAGTGACAGTATTTTATAACCCCTCCAACACAAATCTGAATGGAAAGCCTGAGGTTTGGTTCAGATGTTCTTTTAATCATTGGACTCACTCTAATGGTTCATTGCCTCCTCAGAGAATGTTACCTGCAGAGAATGGCACTCATGTCAAAGCCTCTGTTAAGGTTCCATTGGATGCATACAAGATGGACTTTGTATTCTCTGAGAGCGAACATGGTGGAGTTTTTGATAACAAATTAGGAATGGATTATCACATACCAGTTTTTGGAGGTATTGTAAAGGAACCACCTTTGCATATAGTCCATATTGCTGTGGAGATGGCCCCAATTGCAAAAGTTGGGGGCCTTGGTGATGTTGTTACTAGTCTATCCCGGGCTGTTCAGGATTTAAATCACAATGTGGACATCATTCTTCCAAAGTATGATTGCTTGAACCTTAGCAATATAAAGGACTTTGAATGTCAGAAGAACTATTTATGGGCAGGGACTGACATAAAAGTATGGCATGGAAAAGTTGAAGGTCTCTCTGTCTATTTTTTGGAGCCTCAAAATGGGTTCTTTCAGGTTGGCTGTGTTTATGGTCGTGGGAATGATGCAGAGAGATTTGGTTTCTTTTGTCATGCTGCTCTTGAGTTTCTACTCCAAAATGGATTTCATCCTGATATCATCCACTGTCATGATTGGTCAAGTGCTCCGGTTGCATGGATATTTAAAGACAATTATGCACATTATGGTCTTAGTAAAGCACGACTTGTCTTCACTATTCATAACCTTGAATTTGGAGCCCATTTCATTGGAAAAGCTATGCAATATGCTGACAAGGCTACAACTGTCTCCCCCACATATTCAAGAGAGATTGCTGGTAATCCTGTAATTGCTCCTCATCTTCACAAGTTCCATGGTATAATAAATGGAATCGATCCAGATATATGGGACCCATATAATGATAAATTCATTCCTGTATCTTACTCATCCGAAAATGTTGTTGAAGGAAAAAAAGCAGCTAAGGAAGCCTTGCAACAAAAGCTTGGTTTAAAAAGAGCTGATCTTCCTTTGGTAGGAATTATTACTCGATTGACTCATCAGAAAGGAATCCATCTCATCAAACATGCCATATGGCGCACCCTAGAACGCGGTGGACAGGTTGTATTACTTGGTTCGGCCCCAGATCCTCGTATCCAAAATGATTTTGTGAATTTGAAAAATGAATTGCATTCCTCTCATAATGATCGTGCTAGACTTTGCCTTGCATATGACGAGCCTCTTTCACACTTGATATATGCTGGTGCTGATTTCATTCTTGTTCCTTCAATCTTTGAGCCATGTGGACTCACTCAACTCACTGCAATGAGATACGGTTCAATTCCCGTTGTTCGAAAAACTGGAGGACTTTTTGATTCTGTATTTGACGTTGATCATGATAAGGATAGAGCACAAGCACAAGGTCTTGAGACAAATGGATTTGGTTTTGATGGAACTGATGTTGGAGGAGTTGATTATGCTCTGAACAGGGCAATAACAACATGGTTTGATAGCCGTGATTGGTTCAACAGTTTATGCAAAAGGGTGATGGAGCAAGACTGGTCTTGGAACCGGCCTGCTCTTGACTATTTGGAGCTTTACCATGCAGCATGCAAGTTACAATGA 3498 0.4097 MEMSLQLNCKTVFPYRSGCVKPNSFPGVLPRRSVTFGIGYMCSPCKAGWGASFVRASADFSRRRQQKKVSVTRPKGTAAKGFVPSKRNARLKKGDSVTPVVSEVSGGDKKQTVDVNLDDDKEGGVEFSEDVRFEVIDRTDEIVGDVGELLLLDETVNVIENSQPNISIIDEDVEVLELKEDIPYNGGVGIVEDSEEGLLDRAEIDENVKDTNTDTLDEITEEAVEESRTANDDRIKEEASRLLKLELEENQRQQEIERIAEEKLSQGTKLFVYPPVVKPDQDIEVFLNKSLSALSDEPQILIMGAFNDWKWKSFSVKLNKTRLKGDWWSCQLYVPREAYQVDFVFFNGQNVYDNNDQKDFRIAIEGGMDASAFENFLLDEKRKELEELARVQAERERQAEEQRRIEADRAAKAEDRSRARVEVQRMQETLPQLLKNAVKSIDNVWYIEPSDFKGKDLIRLYYNRSSGPLVHANEIWIHGGHNNWKYGLSIIERLVKSVLKGGDWWYADVIVPDQALVLDWVFADGAPQKAGIYDNNRKQDFHAIVPMVTPDEQYWVEEEQLLYRKFQEERRLRDEAMRHKAEKIAQMKAETKEKTLKRFLLSQKHIVFTDPLDVQAGSTVTVFYNPSNTNLNGKPEVWFRCSFNHWTHSNGSLPPQRMLPAENGTHVKASVKVPLDAYKMDFVFSESEHGGVFDNKLGMDYHIPVFGGIVKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSNIKDFECQKNYLWAGTDIKVWHGKVEGLSVYFLEPQNGFFQVGCVYGRGNDAERFGFFCHAALEFLLQNGFHPDIIHCHDWSSAPVAWIFKDNYAHYGLSKARLVFTIHNLEFGAHFIGKAMQYADKATTVSPTYSREIAGNPVIAPHLHKFHGIINGIDPDIWDPYNDKFIPVSYSSENVVEGKKAAKEALQQKLGLKRADLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVNLKNELHSSHNDRARLCLAYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDSVFDVDHDKDRAQAQGLETNGFGFDGTDVGGVDYALNRAITTWFDSRDWFNSLCKRVMEQDWSWNRPALDYLELYHAACKLQ* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1571 1165 Gene3D Glycogen Phosphorylase B; 711 944 - -
Pvu11g1571 1165 SMART CBM_25_3 455 546 IPR005085 GO:2001070
Pvu11g1571 1165 SMART CBM_25_3 280 365 IPR005085 GO:2001070
Pvu11g1571 1165 SMART CBM_25_3 617 706 IPR005085 GO:2001070
Pvu11g1571 1165 Pfam Starch synthase catalytic domain 716 905 IPR013534 -
Pvu11g1571 1165 Coils Coil 378 416 - -
Pvu11g1571 1165 CDD GT5_Glycogen_synthase_DULL1-like 716 1159 - -
Pvu11g1571 1165 Gene3D Immunoglobulins 280 374 IPR013783 -
Pvu11g1571 1165 Gene3D Immunoglobulins 615 710 IPR013783 -
Pvu11g1571 1165 PANTHER - 53 1163 - -
Pvu11g1571 1165 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 715 1163 - -
Pvu11g1571 1165 Hamap Glycogen synthase [glgA]. 715 1161 IPR011835 GO:0004373
Pvu11g1571 1165 Pfam Starch/carbohydrate-binding module (family 53) 620 705 IPR005085 GO:2001070
Pvu11g1571 1165 Pfam Starch/carbohydrate-binding module (family 53) 284 363 IPR005085 GO:2001070
Pvu11g1571 1165 Pfam Starch/carbohydrate-binding module (family 53) 459 544 IPR005085 GO:2001070
Pvu11g1571 1165 PANTHER STARCH SYNTHASE 3, CHLOROPLASTIC/AMYLOPLASTIC 53 1163 - -
Pvu11g1571 1165 Coils Coil 242 265 - -
Pvu11g1571 1165 Gene3D Glycogen Phosphorylase B; 945 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1571 Pvu-Chr11 39734272 39747901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1571 244 1163 Glycosyltransferase AT1G11720 71.305 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1571 K00703 - gmx:100797872 1983.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1571 11 39734272 39747901 Pvu11g1571 11 39734272 39747901 ECH