Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1547 ATGACCCCAGCCGTGGAGGAGGACCACTACGACCCTTCCCTTTTCCACGACTCCAACGACCGTTTGCTCTCTTCATGCTCCTGCTCCACGTCAGCCTCCGACGACGACGCTCCCACTTCCCAAAACGATAAACCTACTAAAAACGACACCCATGCCCTCCCCCAATTCCCATTCCCCACCATGTGCAAGTACGATGCCTGGATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGCCAGTTCGGCCTCCCCACCCCGCCGCCCTCCGCAGCAAGCATCCCCCGATCAGCCTCCTCTTACCAATGCACCGACACTTCCACCGCCGCCGCCGCCACTATTCCCCGATCGAAATCCGACAACACCGCGGATCGCGGCACCAAGCATTGCAAGAGCTCTGTTGTTCCCATTCGCGACAATGACAACGGTTTTCTCGTGAATAATAATATTAATTTTAATAGTGGTAGTGGTAGTCATTCTGTGCATAATAGGATTTGTGTGAGTGTGTGTGAGGAGGGTGGAATTGGGGAGGGGAATGTGGTGGATGAAGTGGAGCAAGCGTGTACGATTAGGGATTTGGACAATGGAAAGGAGTTTGTGGTGAAGCGGGATGGGGTGTGGAATGAGGTGAAGGAGGTGGGGACTGGGAGGCGTTTGACTGTGGAGGAGTTTGAGATGACGGTAGGGCATTCTCCGATTGTTCAGGAACTAATGAGGAGGCAGAGTGTGGAGGAAGGTGGCGATGGGGAGGGCGTGGATGAGGAAGGCGATGGTGGGAGTGGTGGTGGTGGTGATGAGGGGGATGGTAGCAAAGTGAGGAGAAAAGGTGGGTGGTTTAAGTTTATGAGCTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGGCGGAGTGGTGATGAGAGGGATACGTCTTCGTCAGAGAAGGGGGGTGGCCGGAGGTCAAGTTCTGCCACGGATGATAGCCAGGATTGTGGTAGTGGTTTAGTTCATGGGGGTGAGAGAGTGAGGGTTCGGCAGTATGGGAAGTCCTGCAAGGAGGTTACAGGGCTTTATAAGAGCCAGAAGATTCAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCCAGTGCTGGTGAGGATTATGTGATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAGGGCGAGTTGCTCTTGGAGAAACCGGACGATGGGAATTTGAACATGTTGTTTGTGGTGAATGGGTCGCCGGAGCCGTCTTCTCCTGGCATGGAGAATAATTCGGAGAAGAAGAGAAGGGGGAGGTTGTCTGTCAGCAGAAAATCGTTGAGCGTGGACCAGTTAGTAGTGCCGGAAACTGTGTTTGCTCTCACTGAAAAACCGGTTTGCACCTTTAAGGGTCATCTCCATGACGTGCTTGACCTTTCTTGGTCCAAGTCTCAGAACTTGCTCTCATCTTCAATGGACAAAACAGTGCGCCTGTGGCATTTGTCTAGCCAGTCTTGTCTGAAAGTTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGCTGATGATAGATACTTCATTAGTGGATCATTGGATGCCAAGGTTCGTATATGGAGCATACCTGATAGACAAGTTGTTGATTGGACTGATCTACATGAGATGGTCACTGCTGCTTGCTATACGCCAGATGGTCAGGGTGCACTCGTTGGTACTTACAAGGGTAGCTGTCATTCATATAATACATCTGAAAATAAGTTGCAACAGAAAAGCCAGATAAATTTGCAGAACAGGAGAAAGAGATCAAACCACAAGAAAATTACTGGCTTCCAGTTTCTGCCAGGAAGTTCATCAGAAGTCCTCATCACTTCTTCCGATTCTCGGATTCGACTAGTTGATGGTATTGATCTAGTTCACAAGTTTAAAGGATTTCGGAATGCAAATAGCCAAATTTCTGCCTTCCTCGCAGCAAATGGTAAATATGTTGTCTCAGCAAGTGAGGATTCTCATGTATACATCTGGAAAAATGAAGCTGATTGTAGACCTAGCAGAAGTAAAGGTGTCACCGTGACAAACACATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCAGGTATGGATGACACATGGGAGATGCATGATCCATACTTTGGAGAAGAACCTGAGCTTGGTGATAATGGGGATGATGTCTCGTCAGCCAATCATCCTCCTACCCCTGTAGAGGAAACTTTTGGTTCTGACGGTTCACAATTTGCTTCAGGTTGTAATAACAGTCCACTTCATGGAACCATTGCAAGTGCAACAGATACTTATTTTCTTGATAGAATTTCTGCGACGTTGCCTGAGGGAAAACTTCTAACTACATGGGATCCAAACCCTCAGGTAAGTGTGGATTTATCTTATGGAGTCAATCAAAACATGTCAGCATGGGGTATGGTGATTGTAACTGCAGGCCTTCAAGGAGAAATTAAAATTTTCCAAAATTTTGGATTGCCTCTTGGCATATAA 2526 0.4834 MTPAVEEDHYDPSLFHDSNDRLLSSCSCSTSASDDDAPTSQNDKPTKNDTHALPQFPFPTMCKYDAWISEPSSLSERRSRLLRQFGLPTPPPSAASIPRSASSYQCTDTSTAAAATIPRSKSDNTADRGTKHCKSSVVPIRDNDNGFLVNNNINFNSGSGSHSVHNRICVSVCEEGGIGEGNVVDEVEQACTIRDLDNGKEFVVKRDGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQSVEEGGDGEGVDEEGDGGSGGGGDEGDGSKVRRKGGWFKFMSLKSVVVGQKERRSGDERDTSSSEKGGGRRSSSATDDSQDCGSGLVHGGERVRVRQYGKSCKEVTGLYKSQKIQAHDGSIWSIKFSLDGKYLASAGEDYVIHVWRVVESERKGELLLEKPDDGNLNMLFVVNGSPEPSSPGMENNSEKKRRGRLSVSRKSLSVDQLVVPETVFALTEKPVCTFKGHLHDVLDLSWSKSQNLLSSSMDKTVRLWHLSSQSCLKVFSHSDYVTCIQFNPADDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGTYKGSCHSYNTSENKLQQKSQINLQNRRKRSNHKKITGFQFLPGSSSEVLITSSDSRIRLVDGIDLVHKFKGFRNANSQISAFLAANGKYVVSASEDSHVYIWKNEADCRPSRSKGVTVTNTYEHFHCKDVSVAIPWPGMDDTWEMHDPYFGEEPELGDNGDDVSSANHPPTPVEETFGSDGSQFASGCNNSPLHGTIASATDTYFLDRISATLPEGKLLTTWDPNPQVSVDLSYGVNQNMSAWGMVIVTAGLQGEIKIFQNFGLPLGI* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1547 841 MobiDBLite consensus disorder prediction 25 49 - -
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 468 502 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 112 133 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 292 332 - -
Pvu11g1547 841 Pfam WD domain, G-beta repeat 504 541 IPR001680 GO:0005515
Pvu11g1547 841 Pfam WD domain, G-beta repeat 639 676 IPR001680 GO:0005515
Pvu11g1547 841 Pfam WD domain, G-beta repeat 357 389 IPR001680 GO:0005515
Pvu11g1547 841 Pfam WD domain, G-beta repeat 463 498 IPR001680 GO:0005515
Pvu11g1547 841 MobiDBLite consensus disorder prediction 311 325 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 737 752 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 727 752 - -
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 399 IPR001680 GO:0005515
Pvu11g1547 841 MobiDBLite consensus disorder prediction 245 275 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 294 310 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 417 441 - -
Pvu11g1547 841 MobiDBLite consensus disorder prediction 25 55 - -
Pvu11g1547 841 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Pvu11g1547 841 PRINTS G protein beta WD-40 repeat signature 486 500 IPR020472 -
Pvu11g1547 841 PRINTS G protein beta WD-40 repeat signature 528 542 IPR020472 -
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 468 508 IPR001680 GO:0005515
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 508 542 - -
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 391 - -
Pvu11g1547 841 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 542 IPR001680 GO:0005515
Pvu11g1547 841 Gene3D - 347 702 IPR015943 GO:0005515
Pvu11g1547 841 PANTHER WD REPEAT DOMAIN 44 178 840 IPR040324 -
Pvu11g1547 841 PANTHER WD REPEAT DOMAIN 44 6 109 IPR040324 -
Pvu11g1547 841 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 178 840 - -
Pvu11g1547 841 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 6 109 - -
Pvu11g1547 841 SUPERFAMILY WD40 repeat-like 352 832 IPR036322 GO:0005515
Pvu11g1547 841 SMART WD40_4 635 676 IPR001680 GO:0005515
Pvu11g1547 841 SMART WD40_4 351 390 IPR001680 GO:0005515
Pvu11g1547 841 SMART WD40_4 502 541 IPR001680 GO:0005515
Pvu11g1547 841 SMART WD40_4 595 634 IPR001680 GO:0005515
Pvu11g1547 841 SMART WD40_4 461 499 IPR001680 GO:0005515
Pvu11g1547 841 SMART WD40_4 544 582 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1547 Pvu-Chr11 38957794 38968890 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1547 K20241 - gmx:100806518 1339.71