Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1503 ATGAAAGGCATGCCATTTTCTTCACAATTGAGATGGTCACCACATGAATTTTCCTTGTGCCTTAAAAAATGCCTCAAAGCAAAGACCTTGAGACCAGGCATGCAGGTCCATGCCACCGTAATCACTAGTGGAACAAACATGAACATTTTGTCTCTTCATTCAAAGCTTGTTGGAATGTACGCTAGTTGTGCTGACCTGAAATCAGCTAGGCTTTTGTTTGAAAAGATTGAACACCCCAATGTTTTTGCATTCAATTGGATGATTTTGGGGTTGGCTTTCAATGGTCACCTTGATGATGCATTGTTGTACTTTCGTTGGATGCGTGAGGTTGGCCACATGGGCAACAATTTCACCTTTTCCGTTGTTCTTAAGGCCTGTGTTGGCTTGATGGATGTGAACAAGGGGAGACAGGTTCATGCCATGGTTTGTGAAATGGGTTTTCAAAGTGATGTGTCCGTTGCCAACGCTCTCATAGATATGTATGGCAAATGTGGGGGTATTTCTTATGCTCACAGCGTGTTTGATGGAATGCATGAGAGGGATGTTGCCTCGTGGACGTCAATGATTTGTGGGTTTTGTAATGTGGGGGAAATTGAGCAAGCATTGATGTTGTTTGAGAGGATGAGATTGGAAGGATTGGAGCCAAATGATTTCACATGGAATGTGATTATTGCAGCGTATGCTCGGTCAAGTGATAGCAGCAAAGCTCTTGCTTTCTTTGAGAGAATGAAATGGGAAGGTGTTGTTCCTGATGTGGTTGCATGGAATGCATTGATTTCTGGGCTTGTACAAAGTCATCAAGTCAGGGAAGCGTTCAAGATGTTTAGGGAGATGATACTTTCAGGGATTCAGCCAAATCAAGTGACTGTCGTTGCACTGCTTCCTGCATGTGGATCAGAAGGTTGTATTAAATGGGGAAGAGAGATTCATGGATTTGTATGCCGGAAGGGGTTTGATGCGAATGTTTTCATTGCTAGCGCTCTTATTGACATGTATTCAAAGTGTGGGAGTTTGAAAGATGCTCAAAATGTATTTGACAAGATGCCATTTAAGAATGTTGCGTCATGGAATGCAATGATTGGTTGTTATGGAAAGTATGGCATGGTTGATTCCTCCTTGGAGCTGTTTAAAAGAATGCAGGAAGAAGGACTGCAGCCAAATGAAGTTACTTTTACATGTATTCTTTCAGCATGCAGCCATAGTGGCTTAGTGCAGAAAGGTTTAGAGATTTTCTCATCAATGAATGAATGTTATGGGATTGAGGTAAGCATGAAGCATTATGCTTGTGTGGTTGATCTCTTGTGCCGCTCCGGAAGAACAGTAGAAGCATATGATTTTTTCAAAGCCTTGTCAATACAAGTCACAGAGTCAATGGCTGGAGCTTTTCTGCATGGGTGCAAAGTCCATGGAAGAAGAGATCTGGCTAAAATGATGGCAGAGGAAATAAAGAGAATGAAGTTAAAGGGACCTGGTAGCTTTGTTACACTGTCAAATATATATGCTGCGGAAGGTGACTGGGAAGAGGTTGGGAATCTAAGGAATGTGATGAAAGAAAGAAATGTCCATAAGCAGCCTGGTTTTAGTTGGCTTGAAAAGCCAGGTGAGGTACATGAAGGGAGGAAAGAGAAAGAAGGGAAGAATATGGCCAGTGGATTGGATGTGACATGA 1668 0.4227 MKGMPFSSQLRWSPHEFSLCLKKCLKAKTLRPGMQVHATVITSGTNMNILSLHSKLVGMYASCADLKSARLLFEKIEHPNVFAFNWMILGLAFNGHLDDALLYFRWMREVGHMGNNFTFSVVLKACVGLMDVNKGRQVHAMVCEMGFQSDVSVANALIDMYGKCGGISYAHSVFDGMHERDVASWTSMICGFCNVGEIEQALMLFERMRLEGLEPNDFTWNVIIAAYARSSDSSKALAFFERMKWEGVVPDVVAWNALISGLVQSHQVREAFKMFREMILSGIQPNQVTVVALLPACGSEGCIKWGREIHGFVCRKGFDANVFIASALIDMYSKCGSLKDAQNVFDKMPFKNVASWNAMIGCYGKYGMVDSSLELFKRMQEEGLQPNEVTFTCILSACSHSGLVQKGLEIFSSMNECYGIEVSMKHYACVVDLLCRSGRTVEAYDFFKALSIQVTESMAGAFLHGCKVHGRRDLAKMMAEEIKRMKLKGPGSFVTLSNIYAAEGDWEEVGNLRNVMKERNVHKQPGFSWLEKPGEVHEGRKEKEGKNMASGLDVT* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1503 555 Pfam PPR repeat family 181 227 IPR002885 -
Pvu11g1503 555 Pfam PPR repeat family 250 297 IPR002885 -
Pvu11g1503 555 Pfam PPR repeat family 351 399 IPR002885 -
Pvu11g1503 555 Pfam PPR repeat family 79 126 IPR002885 -
Pvu11g1503 555 Pfam PPR repeat 427 448 IPR002885 -
Pvu11g1503 555 Gene3D Tetratricopeptide repeat domain 326 550 IPR011990 GO:0005515
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 417 IPR002885 -
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
Pvu11g1503 555 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Pvu11g1503 555 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Pvu11g1503 555 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Pvu11g1503 555 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Pvu11g1503 555 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Pvu11g1503 555 Gene3D Tetratricopeptide repeat domain 7 131 IPR011990 GO:0005515
Pvu11g1503 555 Gene3D Tetratricopeptide repeat domain 243 311 IPR011990 GO:0005515
Pvu11g1503 555 MobiDBLite consensus disorder prediction 527 555 - -
Pvu11g1503 555 Gene3D Tetratricopeptide repeat domain 132 242 IPR011990 GO:0005515
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Pvu11g1503 555 PANTHER - 219 531 - -
Pvu11g1503 555 PANTHER - 16 249 - -
Pvu11g1503 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Pvu11g1503 555 MobiDBLite consensus disorder prediction 533 548 - -
Pvu11g1503 555 Pfam E motif 473 531 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1503 Pvu-Chr11 37153574 37155563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1503 66 538 Glycoside Hydrolase AT3G49170 33.981 1.63e-90 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1503 - - pvu:PHAVU_011G144900g 1127.08