Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1408 ATGAGTTGCCATGGACAGGGTCTCCGACATGGCCAGCTCCTCCTCAATTTACTCGAAGCGTGTTCCACCATTCGGTCCTCCAACACCGCCAAATGTCTCCATGCACTCTCCATTACAATTGGTCCCATTCCAAAGCAATCCATTTTCATTCACAACAACATCCTCTCATTATACACTTCCCTTGGTGAAGTGCTCGATGCACGCAAGATGTTCGATGCTTTGCCCAACAGAACAGTTGTCTCGTACAACACACTCATCACTGCTTATTGTCGACGTGGGGATGTAGATGATGCATGGAACCTTCTCTCCCACATGAGGGGGAGTGGTTTTACGCCTACCCAGTACACCCTCACAGGGCTGTTGTCGTGTGAATTCTTGAATCTTTGTCAGGGTTCTCAGTTGCAGGCTTTGAGCATCAGGAATGGGCTCTTTGGTGCTGATTCTTTCGTGGGTACTGCATTATTGGGCTTGTTTGGGAGGCATGGATGTTGGGATGAAGTTTTTTCTGCCTTTGAATATATGCCCCAGAAGAGCTTGGTGACATGGAACTCCATGATATTCTTGCTGGGGCGTAATGGGTTCGTTGAAGAGTGTAAGATTTTGTTTCATGATCTTGTGAGGACGGGGATGTCTTTGTCGGAAGGTTCTTTTGTTGCTGTGTTGTCTGGACTTGTTTATTCTGAGGAGGATTTGGAATATGGTGAACAGATACATGGGTTAATGGTCAAATGTGGGTTTGGTTGTGAAATTACTGCACTTAATACTCTTATCAGTGCGTATGTCAGGTGCAAAGCAATGTTCGCAGTGGAAAGATTGTTTGAGCAGGTTCCTGTTCAGAATGTTGTATCCTGGAATACTGTTATGGATGCATTGGTTACAAGTGAGAGACCTATGGCGGCATTGGAGTTGTTTTTGAATATGGTAAGCAGTGGATTGATGCCAACTCAGGCCACGTTTGTTGCTGTTATTCAATCCTGTAGTAGCTTGAGAATTCTGGTATTTGGAGAATCTGTCCATGCTAAGGTAGTCAGGAGTGGTTTTGAGACTGATGTTGTTGTGGGTACTGCATTGATAGACTTCTATGCCCAATGTAGTAAGTTTATTTTAGCTCATAAATGTTTTGATCAGATAGAAGAGAAAAATTTGGTTTCTTGGAATGCTTTGATAGTGGGTTACTCAAACATTTGCTCTTCCACAGCAATTCTATTGTTACAAGAAATGCTCCAATTGGGTTATTCCCCAAATGAGTTTTCTTTTTCTGCTGTTCTCAAGTCATCTTCACTGTCTAGCCTTCATCAGCTACACGGTTTGATTATAAGAGCAGGGTACGAGAGTAATGAATACGTATTAAGCTCTCTTGTTTTGTCTTACACCAGAAATGGTCTCATAAATGAAGCATTTTCTTTTGTCGAAGAATTTGAGAACCCACTTCCTGTAGTCTCATCTAACATCATTGCTGGAATCTATAACAGAACTTGCCAGTACTATGAAGCAATAAAGCTACTTTCTTTGCTAGAAAAACCCGATATTGTGTCCTGGAACATTGTCATTTCAGCTTGGACTCGGAGCAATGATTATGACAAAGCTTTTACACTTTTCAAGCATATGCATTCAGCATGCATCCGTCCAGATAGTTACACATTTATGAGTGTATTATCTGGGTGTACCAAACTTTGTCGTCTGGATTTGGGTAGTTCTCTACATGGACTTGTTATAAAGACTAATCTTGGTAATTTCGACACATTTTTGGGAAATGCACTAATTGACATGTATGGGAAGTGTGGAAGCATTGATAGCTCAGTGAAAGTTTTTGAAGAAATTATGCACAAAAATATCATTACATGGACAACTTTAATCACTGCACTTGGGTTGAATGGTCTTGCTTATGAGTCAGTAATGAAATTCCGAAACATGAAAATGATGGGGTTGAAGCCTGATGCATTAGCACTCAGAGCAGTGCTTTCTTCATGCAGATATGGTGGATTAGTGGAAGAAGCCATGGAAATTTTCAGGCAGATGGGAACTAGTAATGGGATGCCACTAGAACATGATCATTACCATATTATGGTTGACCTACTGGCAAAAAATGGACAAATTAGGGAAGCTGAGAAAATCATTGCAAGCATGCCTTTCCCACCAAATGCTAATATATGGCGTAGCTTCCTTGAAGGCTACAGTAGGCAATAA 2187 0.4143 MSCHGQGLRHGQLLLNLLEACSTIRSSNTAKCLHALSITIGPIPKQSIFIHNNILSLYTSLGEVLDARKMFDALPNRTVVSYNTLITAYCRRGDVDDAWNLLSHMRGSGFTPTQYTLTGLLSCEFLNLCQGSQLQALSIRNGLFGADSFVGTALLGLFGRHGCWDEVFSAFEYMPQKSLVTWNSMIFLLGRNGFVEECKILFHDLVRTGMSLSEGSFVAVLSGLVYSEEDLEYGEQIHGLMVKCGFGCEITALNTLISAYVRCKAMFAVERLFEQVPVQNVVSWNTVMDALVTSERPMAALELFLNMVSSGLMPTQATFVAVIQSCSSLRILVFGESVHAKVVRSGFETDVVVGTALIDFYAQCSKFILAHKCFDQIEEKNLVSWNALIVGYSNICSSTAILLLQEMLQLGYSPNEFSFSAVLKSSSLSSLHQLHGLIIRAGYESNEYVLSSLVLSYTRNGLINEAFSFVEEFENPLPVVSSNIIAGIYNRTCQYYEAIKLLSLLEKPDIVSWNIVISAWTRSNDYDKAFTLFKHMHSACIRPDSYTFMSVLSGCTKLCRLDLGSSLHGLVIKTNLGNFDTFLGNALIDMYGKCGSIDSSVKVFEEIMHKNIITWTTLITALGLNGLAYESVMKFRNMKMMGLKPDALALRAVLSSCRYGGLVEEAMEIFRQMGTSNGMPLEHDHYHIMVDLLAKNGQIREAEKIIASMPFPPNANIWRSFLEGYSRQ* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 428 578 IPR011990 GO:0005515
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 228 331 IPR011990 GO:0005515
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 332 427 IPR011990 GO:0005515
Pvu11g1408 728 Pfam PPR repeat 253 275 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 152 177 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 685 709 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 613 643 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 585 612 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 355 381 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 180 209 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat 653 674 IPR002885 -
Pvu11g1408 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 584 728 IPR011990 GO:0005515
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 126 227 IPR011990 GO:0005515
Pvu11g1408 728 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Pvu11g1408 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Pvu11g1408 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Pvu11g1408 728 TIGRFAM PPR: pentatricopeptide repeat domain 511 545 IPR002885 -
Pvu11g1408 728 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Pvu11g1408 728 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Pvu11g1408 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat family 78 122 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat family 280 327 IPR002885 -
Pvu11g1408 728 Pfam PPR repeat family 508 556 IPR002885 -
Pvu11g1408 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Pvu11g1408 728 PANTHER OS01G0754700 PROTEIN 74 727 - -
Pvu11g1408 728 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 74 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1408 Pvu-Chr11 31056612 31059826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1408 400 728 Glycoside Hydrolase AT3G49170 21.829 1.63e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1408 - - gmx:100781755 1205.28