Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1224 ATGTTGCAGAAGGTGTGCAAGAGATACAGAATCATGGTGGGTGGAAATGGTTTGTTTTACCCCGTTGTGGGGTTTGCATCGATCGTGTTGTTCATATACATGTCTTTTGGGGACGTGAAGTTTGGTTTTGAGGAGGAAGTGGAATTGGCTTTTGTGGAGAGAAATGGAACTCAATTTATGGTGGATGGGAAGGCTTTCTATATTAATGGATGGAACTCTTACTGGTTAATGGTGCAATCTGTAGATGAGTATTCCAGGCCAAAGGTGCGTGAAATGCTGAAGGCTGGGGCCAAGATGGGGCTCACTGTGTGTAGAACTTGGGCCTTCAATGATGGTGACTACAATGCCCTTCAGAGTTCTCCTGGTGTGTTCAATGAACAAGCTTTCAAGGCCTTGGACTATGTTATAGCAGAAGCAAGGAAACATGGAATTAGGCTGCTCCTTAGCTTAGTAAATAACTTGCATGCATATGGTGGGAAGACTCAATATGTCAAATGGGCATGGCAAGAGGGGGTAGGACTAAGCTCATCTAACGATTCTTTCTTCTTTGATCCATCAATCCGCAGTTATTTCAAGAATTATATCAAGACAATTCTGACAAGGAAGAATACTATAACTGGACTTGAATATAGAAATGACCCCACCATTTTTGGTTGGGAATTAATTAATGAACCTCGGTGCATAACTGATCCTTCTGGTGACACTCTCCAAGATTGGATAGAGGAAATGTCAGCTTTTGTCAAACTGATCGACAAGCGCCATCTTGTGACGATTGGACTTGAAGGTTTTTATGGTCCTAATGATCCGAAAAGATTGACAGTGAACCCTGAGGACTGGGCATCTCGACTTGGATCTGATTTTATAACGAATTCCTTAATCTCAAACATTGATTTCACCTCTGTTCATATCTATCCTGACCACTGGTTTCATGAGCAAGTATCTGAAGACTACATAAAATTTGTTTCCAAGTGGATGCTTTCTCACATTGAAGATGGTGATAAGGTACTGAACAAGCCAGTTGTGTTCTCTGAATTTGGATTGTCAGACATAAATTTTACAATGTCCGAGCGAAAAACAATGTACAAAACAATTTTAGACATATCCTACAAATCTGCAAAGAAAAACAGGTCTGGAGCAGGTGCTCTAGTTTGGCAGTTCTTAGTTGGAGGAATGCAGGAGTTTACAGATGATTTTGGAATCATCCCTGCGGAAAAGACACCAATTCCTTCATTATTTATTGAACAATCATGCAGATTAGCCAAGGTCAAGGGATGGCCTCATAAGGACAAAAGTTTCAAACAATTTTGTTAG 1311 0.4073 MLQKVCKRYRIMVGGNGLFYPVVGFASIVLFIYMSFGDVKFGFEEEVELAFVERNGTQFMVDGKAFYINGWNSYWLMVQSVDEYSRPKVREMLKAGAKMGLTVCRTWAFNDGDYNALQSSPGVFNEQAFKALDYVIAEARKHGIRLLLSLVNNLHAYGGKTQYVKWAWQEGVGLSSSNDSFFFDPSIRSYFKNYIKTILTRKNTITGLEYRNDPTIFGWELINEPRCITDPSGDTLQDWIEEMSAFVKLIDKRHLVTIGLEGFYGPNDPKRLTVNPEDWASRLGSDFITNSLISNIDFTSVHIYPDHWFHEQVSEDYIKFVSKWMLSHIEDGDKVLNKPVVFSEFGLSDINFTMSERKTMYKTILDISYKSAKKNRSGAGALVWQFLVGGMQEFTDDFGIIPAEKTPIPSLFIEQSCRLAKVKGWPHKDKSFKQFC* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1224 436 Pfam Cellulase (glycosyl hydrolase family 5) 84 385 IPR001547 GO:0004553|GO:0071704
Pvu11g1224 436 PANTHER - 15 436 IPR045053 GO:0004553
Pvu11g1224 436 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 15 436 - -
Pvu11g1224 436 Gene3D Glycosidases 48 423 - -
Pvu11g1224 436 SUPERFAMILY (Trans)glycosidases 51 413 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1224 Pvu-Chr11 19485180 19489889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1224 15 436 Glycoside Hydrolase AT2G20680 69.340 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1224 K19355 - gmx:100811461 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1224 11 19485180 19489889 Pvu11g1224 11 19485180 19489889 ECH