Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1113 ATGGAAACAAGATCTGCAAAACGCAAGAAAATGGCTCAAATTGTAGCGAACGATGCCAAAGCAGCCACGGATCGGATCAGTGATCTCCCTGATGCAGTTCTTCATCATATGCTTTTCTTACTTCCCATAAAATGTGTTGCACAAATGAGCATTCTTTCCAAACGATGGAAACATTTATGGTGCACTTTTCCTGACCTTGATTTCAGAACCCTTGACCCGTTTCAAATCTCTTCCAAAAATGTTAAATTTGTGGAGTTTGAAAAGCCAAGGCAACCTTTGGATTTGTCACGGATGGATTTCGTCTCACAAGTTCTCTCCATGCGTGACAAACACTCAGACATTAGGGTTCTTTGTTTTCGTGCACGTTTGAGTTTTTCACGGTTAAATGGTTTGATTCGTAGGGCTATTAGGCATAACGTTAGAGAACTTGATATTGAAGCGTCAACAGTGTGTACAGATGATTACTTCAACTTTCCTAGATGTGTTATTGGGAGTGAATCTTTAAGGGTTTTGAAACTAAAATCAGGTTTTCGATTGCCTCCATCATCAGTTATGAGGCATGGCTTTCGATCTCTTCAAACCTTGTCTCTTTCGGTAGTTATTTTGAACAACCAACCTTCTCTCACTGATTTGTTCTCTGAATCGTCCTTTCCTCTTCTTAAAACTCTCAACCTTGATGCATGCTTCGGGTTAAAATATCTTCATGTTGGATGTAGGGCTCTTGAAGATTTCAACTTAGAGAAATGTTATGAGCTAGAGGGTTTGGACATCTCATGTGCAAAACTTGAGAGAATGAGATTGGTGAGATGTTTTGATGCCTATAGTGACCAGAGTTGGGTAAAAATCAATGCACCCAAGCTTGAGCATTTGTGTTGGCAGCATAATGCTGTCACTGACATGGCTATGTTTGAGCCTTCGAATTTGTTGCATGAGGTCACAGTTGGTTTCTATTTATTGACAAGAGATAATAGTCGGAGTAAGCTTCAAAGTGCTGTTGATCTATTATCTGGACTATCTCGTGTGCGTTCCTTGTCTCTTGAAAGGCAAACTATTGAGATTCTATCAAATAATCACCTCCTTTTTCAGCCCTTTTATGATCTGAAACATTTAGAACTGCAAACTGGTTTCAACAAAAGCAATATTCCGGGATTGACATGTCTTTTCAAGAGCTCTCCCACTCTCAACACTTTGATTCTGAAGATCATTCACGAACATAGGATTGAAAGAAAAGAATGGAATAGAGACTTGTGGGACATGACTATCTCTGAGGGAGAGCAGTATTGGGAGTCTCAGATCAGAACTCTGGAGTCTTTTCTACAACACTTGAAAGTAGTCAAAATCCATGGATTTCTTGATTATGAGAATGAAGTTGCACTTGCAAAGTTTCTCCTTAAGCATGGAAAAGCATTGGAAGAAATGGTATTACACACAGGACATTGCAACGCAAGAGACACTCTTAGGCGACAAAAAATAAGGTCACAAATGATGGGGTTCTCTTGGGCTTCTTCTAATGCAAAAGTCGCATTTCAGTAG 1533 0.3966 METRSAKRKKMAQIVANDAKAATDRISDLPDAVLHHMLFLLPIKCVAQMSILSKRWKHLWCTFPDLDFRTLDPFQISSKNVKFVEFEKPRQPLDLSRMDFVSQVLSMRDKHSDIRVLCFRARLSFSRLNGLIRRAIRHNVRELDIEASTVCTDDYFNFPRCVIGSESLRVLKLKSGFRLPPSSVMRHGFRSLQTLSLSVVILNNQPSLTDLFSESSFPLLKTLNLDACFGLKYLHVGCRALEDFNLEKCYELEGLDISCAKLERMRLVRCFDAYSDQSWVKINAPKLEHLCWQHNAVTDMAMFEPSNLLHEVTVGFYLLTRDNSRSKLQSAVDLLSGLSRVRSLSLERQTIEILSNNHLLFQPFYDLKHLELQTGFNKSNIPGLTCLFKSSPTLNTLILKIIHEHRIERKEWNRDLWDMTISEGEQYWESQIRTLESFLQHLKVVKIHGFLDYENEVALAKFLLKHGKALEEMVLHTGHCNARDTLRRQKIRSQMMGFSWASSNAKVAFQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1113 510 SUPERFAMILY RNI-like 93 401 - -
Pvu11g1113 510 SMART 9598neu4hmm 436 510 IPR006566 -
Pvu11g1113 510 Pfam FBD 436 475 IPR006566 -
Pvu11g1113 510 Gene3D Ribonuclease Inhibitor 21 314 IPR032675 -
Pvu11g1113 510 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Pvu11g1113 510 SUPERFAMILY F-box domain 23 67 IPR036047 GO:0005515
Pvu11g1113 510 PANTHER F-BOX PROTEIN-LIKE 22 455 - -
Pvu11g1113 510 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 22 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1113 Pvu-Chr11 12948398 12952048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1113 21 479 EF-hand Containing Proteins AT5G41840 24.078 2.62e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1113 - - gmx:100819136 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1113 11 12948398 12952048 Pvu11g1113 11 12948398 12952048 ECH