Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1109 ATGGTTATTACTTCGGACAGAAACATGTTACAAAACTACGTTCCAGTTTATGTCATGCTCCCTCTAGGAGTTGTCACTGTTGACAGTGTTTTTGGAGACCCAAATGGTCTTAAAGAACAGCTCTTGAAGCTAAGAGCAACAGAAATTGATGGAGTTATGGTTGATGTGTGGTGGGGGATCGTAGAACTAAAGGGGCCTAAGCAGTACGATTGGAGTGCCTATAGGAGCTTGTTTAAGCTGGTTCAGGAATGTGGCTTGAAACTTCAAGCTATTATGTCATTCCATCAGTGTGGAGGGAATGTAGGAGATGTAGTTAACATCCCAATTCCCAAGTGGGTGCTTGACATTGGAGAATCTGATCCTGATATCTTCTACACCAACCGTTCAGGCACAAGGAATAAGGAGTATCTAAGTGTTGGTGTGGACGACGAGCCTATATTCCATGGAAGAACAGCCATTGAGATATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAGAATCTGGGCTTATTGTAGACATTGAAGTAGGGCTTGGCCCAGCAGGAGAGCTCAGATATCCCTCTTATCCACAAAATCAAGGATGGGAATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGCTGATTATAAAGAAGCTGTAGTAAGTGCTGGCCATCCTGAATGGGAACTACCAGATGACGCAGGCCAGTACAATGATGTACCAGAATCTAGTGGATTCTTCAAATCAAATGGCACATATGTCACTGAGAAAGGGAAGTTCTTCTTGACTTGGTATTCAAACAAATTGCTGAATCATGGTGATCAAATCCTAGATGAAGCCAACAAAGCTTTCCTGGGCTCTAAAGTCAAATTAGCGATCAAAGTATCTGGAATCCACTGGTGGTACAAAGTTGAAAATCACGCTGCTGAGCTTACTGCTGGATATTACAACCTTAATGATAGGGACGGATATCGTCCCATTGCAAGAATGCTGTCTCGCCATCATGCCATTTTGAACTTTACTTGTCTTGAGATGAGGGACTCAGAACAAAGCTCAGATGCCAAAAGTGGACCAGCGGAGCTCGTTCAGCAGGTATTGAGTGGTGGTTGGACAGAAGACATCCTAGTTGCTGGAGAAAATGCACTTCCCAGGTATGATTCCACAGCATACAACCAAATCATACTGAACGCAAGGCCACAAGGCGTCAACAAAAATGGCCCTCCAAAAGCAAAGATGTTTGGAGTAACATATCTTCGTCTATCAGATGATCTACTGCAACAATCAAATTATGATACATTCAAAAAATTTGTGCTAAAGATGCATGCAGATCAGGGTCACTGTGAAGACCCTCAAAACTACAATGCTGGCACAACACCATTGAAGCCATTGGCACCAAAGATTCCCATTGAGGTTCTTCTTGAAGCGACTAAACCAATACCGCCATTCCCCTGGCTTCCAGAGACAGACATGAAAATTGATGGTTGA 1494 0.4264 MVITSDRNMLQNYVPVYVMLPLGVVTVDSVFGDPNGLKEQLLKLRATEIDGVMVDVWWGIVELKGPKQYDWSAYRSLFKLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPKWVLDIGESDPDIFYTNRSGTRNKEYLSVGVDDEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIVDIEVGLGPAGELRYPSYPQNQGWEFPGIGEFQCYDKYLKADYKEAVVSAGHPEWELPDDAGQYNDVPESSGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGSKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQSSDAKSGPAELVQQVLSGGWTEDILVAGENALPRYDSTAYNQIILNARPQGVNKNGPPKAKMFGVTYLRLSDDLLQQSNYDTFKKFVLKMHADQGHCEDPQNYNAGTTPLKPLAPKIPIEVLLEATKPIPPFPWLPETDMKIDG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1109 497 PRINTS Plant beta-amylase signature 174 183 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 330 340 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 372 381 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 386 395 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 401 417 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 419 433 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Plant beta-amylase signature 434 448 IPR001371 GO:0000272|GO:0016161
Pvu11g1109 497 Gene3D Glycosidases 3 497 - -
Pvu11g1109 497 PANTHER BETA-AMYLASE 6 4 492 - -
Pvu11g1109 497 ProSitePatterns Beta-amylase active site 2. 184 194 IPR018238 GO:0000272|GO:0016161
Pvu11g1109 497 Pfam Glycosyl hydrolase family 14 17 439 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 SUPERFAMILY (Trans)glycosidases 10 493 IPR017853 -
Pvu11g1109 497 PANTHER - 4 492 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 48 62 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 69 87 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 91 112 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 184 206 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 256 275 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 292 308 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 309 320 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 327 350 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 364 386 IPR001554 GO:0000272|GO:0016161
Pvu11g1109 497 ProSitePatterns Beta-amylase active site 1. 95 103 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1109 Pvu-Chr11 12853935 12856880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1109 2 495 Glycoside Hydrolase AT2G32290 67.677 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1109 K01177 - gmx:100787580 933.71