Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1108 ATGTCACTACTCAAGACAACAGCTCTTCTTCCCAAACCTTGTTCCACCACCACCCTCAGTTCTCTACAATGTGGAATCTTGCTGCAATCACTCTCCAATTCCAAATCCTTAACCCAAGCTCAGCAACTCCACGCCCAAGTGACCACCGGCGGCACCCTCCGCCACAACACCTATCTCGCCACCAAGCTCGCCGCATGCTATGCCGCCTGCGGCCACATGCTCCATGCCCAACTCATCTTCGATCAAATTGTGCTAAAGAACTCGTTTCTCTGGAACTCCATGATCAGGGGCTACGCCTGCAACCACTCTCCCACCAAGTCCCTTGTTCTCTACCGTGATATGTTGCGTTTTGGACAGAAGCCTGACAATTTCACCTACCCTTTTGTCCTCAAGGCCTGTGGGGACCTTCTGTTTCGCAGAATTGGTAGAAAGGTTCACGCTTTGGTGGTGGTTGGTGGGTTGGAAAAGGATGTTTACGTGGGGAACTCGATACTTTCGATGTACTTTAAGTTTGGTGACGTGGCAGCTGCGCAGGTGGTGTTTGATAAAATGCCTATGAGGGACTTGACTTCTTGGAACACCATGGTGTCGGGTTGTGTGAAGAATGGGGAGGCTGAGGGTGCTTTTGAGATTTTTGGGGAGATGAGGAGGGTTGGCGTTGTGGGAGACGGGACCACCTTGCTTGCTCTTCTCTCTGCTTGCGGGGATGTTATGGATTTGAAGATGGGTAAAGAGATTCATGGTTATGTTGTTAGAAATGGTGGGAATGGGAGAGTGCATAACGGGTTTTTGGTGAATTCAGTTATTGACATGTACTGCAATTGTGAGTCTATATCTTGTGCCAGGAAGTTGTTTGAAAGGTTGATAGTGAAGGACATTGTGTCGTGGAATTCTTTGATATCCGGGTATGAGAAACGTGGGGATGCTTTTGAAGTTCTAGAGCTTTTTGGCCGGATGGTTGAGGGAAGTGCAGTGCCGGATGAGGTGACTGTGATTTCAGTGCTTGGGGCTTGTAATCAAATCTCGGCTTTGCGGTTGGGCACGTCTGTTCATTCATATGTTGTTAAGAGGGGTTATGGAGTGAATGTAGCTGTTGGAACTGCACTTATTGGCATGTATGCTAATTGTGGGAGTTTAATTTGTGCGTGTTGTGTGTTTGATGAGATGCCTGAGAAAAATTTGGCTGTTTGGACTGTTATGATTACTGGCTTTGGAATTCATGGAAGGGGAAGAGAGGCCGTCTCCATTTTTTACGAAATGTTAGGTACAAATGTGACTCCAGATGAGGGCATTTTCACTGCAGTTTTATCTGCTTGTAGTCATTCTGGATTAGTGGATGAGGGTAAAGAAATTTTCTATAAAATTACTAGAGTCTATAATGTAGACCCTGGACCCACTCATTATTCATGTTTAGTGGATCTACTTGGCAGAGCAGGGTACTTAGATGAAGCATATGCAGTAATAGAGAGTATGAAATTAGAACCCAATGAGGATGTGTGGACTGCTCTTCTTTCAGCATGCAGATTGCATCGAAATGTCAAGTTAGCAGAGATCTCGGCACATAAGCTTTTTGAATTGAATCCAGATGGAGCGAGTGGATATGTTTGCCTTTCCAACATCTATGCTGCTGAGAGACGGTGGAAGGATGTAGAAAATGTGAGGGCATTGGTGAAAAAAAGCAGATTGAAGAAAGCACCTAGTTACAGTTTTGTTGAGCTAAAGAAGATGTTTCATCAATTTTTTGTTGGGGATACTTACCACCAACAGTCGGATGATATTTACGCCAAATTGAAAGACATGAGTGAGCAGCTGAAGAAAGCTGGATACAAACCTGACACTACTTCAGTTCTTCACGATGTTGAGGAGGAAATAAAGGAGAAAATGCTTTGGGATCATAGCGAGAGGTTGGCACTTGCTTTTGCTCTTATTAACACTGCTCCGGGGACCACAATCAGGATAACCAAGAATCTTCGTGTGTGTGGAGATTGCCATACAGTAATTAAAATGATTTCTAAGCTCACAAATCGGGAGATTATCATGCGAGATATTAGTAGGTTCCACCATTTTAGAGATGGCATATGCTCATGTGGTGGATATTGGTGA 2103 0.4475 MSLLKTTALLPKPCSTTTLSSLQCGILLQSLSNSKSLTQAQQLHAQVTTGGTLRHNTYLATKLAACYAACGHMLHAQLIFDQIVLKNSFLWNSMIRGYACNHSPTKSLVLYRDMLRFGQKPDNFTYPFVLKACGDLLFRRIGRKVHALVVVGGLEKDVYVGNSILSMYFKFGDVAAAQVVFDKMPMRDLTSWNTMVSGCVKNGEAEGAFEIFGEMRRVGVVGDGTTLLALLSACGDVMDLKMGKEIHGYVVRNGGNGRVHNGFLVNSVIDMYCNCESISCARKLFERLIVKDIVSWNSLISGYEKRGDAFEVLELFGRMVEGSAVPDEVTVISVLGACNQISALRLGTSVHSYVVKRGYGVNVAVGTALIGMYANCGSLICACCVFDEMPEKNLAVWTVMITGFGIHGRGREAVSIFYEMLGTNVTPDEGIFTAVLSACSHSGLVDEGKEIFYKITRVYNVDPGPTHYSCLVDLLGRAGYLDEAYAVIESMKLEPNEDVWTALLSACRLHRNVKLAEISAHKLFELNPDGASGYVCLSNIYAAERRWKDVENVRALVKKSRLKKAPSYSFVELKKMFHQFFVGDTYHQQSDDIYAKLKDMSEQLKKAGYKPDTTSVLHDVEEEIKEKMLWDHSERLALAFALINTAPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDISRFHHFRDGICSCGGYW* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1108 700 Gene3D Tetratricopeptide repeat domain 13 137 IPR011990 GO:0005515
Pvu11g1108 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Pvu11g1108 700 Pfam DYW family of nucleic acid deaminases 608 700 IPR032867 GO:0008270
Pvu11g1108 700 Pfam PPR repeat 162 187 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat 396 421 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat 432 455 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat 467 492 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat 367 393 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat 191 220 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat family 86 133 IPR002885 -
Pvu11g1108 700 Pfam PPR repeat family 291 338 IPR002885 -
Pvu11g1108 700 Gene3D Tetratricopeptide repeat domain 257 340 IPR011990 GO:0005515
Pvu11g1108 700 Gene3D Tetratricopeptide repeat domain 138 256 IPR011990 GO:0005515
Pvu11g1108 700 Gene3D Tetratricopeptide repeat domain 460 635 IPR011990 GO:0005515
Pvu11g1108 700 Gene3D Tetratricopeptide repeat domain 341 459 IPR011990 GO:0005515
Pvu11g1108 700 PANTHER - 40 103 - -
Pvu11g1108 700 PANTHER - 102 673 - -
Pvu11g1108 700 Pfam E motif 510 572 IPR046848 -
Pvu11g1108 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Pvu11g1108 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 102 673 - -
Pvu11g1108 700 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 40 103 - -
Pvu11g1108 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Pvu11g1108 700 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Pvu11g1108 700 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Pvu11g1108 700 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Pvu11g1108 700 TIGRFAM PPR: pentatricopeptide repeat domain 90 122 IPR002885 -
Pvu11g1108 700 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1108 Pvu-Chr11 12850240 12852659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1108 75 700 Glycoside Hydrolase AT3G49170 36.378 2.73e-136 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1108 - - gmx:100817006 1207.97