Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1105 ATGGAAGCTTGCTGCTGCAACCTTGAAGTGGATGTAAATGGAGAAGAGACCTTCATGGTGGACAAGAGTGTTATTACACAGTATTCAAACAAGTTTGCTAGATTATTTGGAAAGTCTAGTGGTGCCACAGGAAAGCTTAAAGTAATATTTCACGATTTTCCAGGAGGAGCAGAAGGTTTTGAGCTTATGTTAAAATTCTGTTACAATAATGGAACAGCTGATATAAGTCCTTCAAATTTGTTCCTTGCGCGTTGTGCTGCTGAGTACATGGAAATGAAGGAACCAGTGGCTGATGTATCTAACTTGTTGGAGCTAACTGAAAAGTCACTCCAAGAGATCAACTATTGGACTTGGTCAGATGTTTTGATTGCTTTGAAGCAGTGCCAGAATTTACTAGTTCTAGATTGTTCGGTGATGGTAGAAAGATGCTTGGACACTATTGTGGGGAGGTTGGTTTTGGCTAGTGAAGCAAGTCCCTGTCCATCAACTAGTTCCACAGATAGTTCTTGGATTCGGTTTTCATGTGACTCTAAGAGCACTGAGAGTGCAAAAACAAGTTTCACTCGTCTGACATGGTGGTTTGAAGATCTCCTTTTTTTGAGTCCCTTGTTGGTTGCAATGTTGGTTAAGTCAATGCTTGCGCGAAAGATGGACCATGTTTTGATCAGCAGGTTTCTTATCTACTATCAGAAGGCTAAATTTTCCACTTCTACTACAAATGAGAAGAGCAAGATAATAGAAATGGTCATAGATATGCATTCTGATATGGATCTAAGTTGTGTTCCTTGCAAGACTTTGTTTGGGATTCTGAGGGTTACTTTAGGTTTAAATATAAGCAAATGTAGCAGGAATAAGTTGGAGACTATGATTGGTTCCCAATTGGATCAAGCAACCTTGGACAATTTGCTTGTTCCATCTCCTTATGGAATAAGCTACTTGTATGATGTGAACCTTGTTTTGAGATTTTTAAAGGCATTCTTGCGGCGAGGGAATGGTCCAGTCACTCCCATTCGGATGAGGAAAGTTGCTAGTTTAATAGATTTGTATACAGCAGAAATAGCCCCTGATCCTTGTTTGAAAACTTCCAAGTTCTTGGCTCTTGCCACAGCACTTCCAGATTCCGCAAGAGATTCTTATGATGAGATCTACCATGCAATTGACATGTATCTTGAGGTACATGCTCAATTGTCACAGGAAGAAAGAATGAAGATATGCTGCGTTTTAAATTATGAAAAGCTTTCACCCCAAGCTTGCCTACACCTATCTCAGAACAAAAAATTTCCTTCAAAATCCGCAGTTCAGGCTCTTATCTCTCAACAATATAAGCTAAAAAATTTACTCCATGTTACTCCCAGTACAAGTTCATACAACGATTCACCTTGCAGCTCCAGTGGGGCTGCTCAAAAGGTAAAGAAAGATAAAACCAGTGAAGAGGTTGTGTTGTATGCTGGCAATTTTGATCTTTCTACAGATAATGAGAAACTCAAAGCACATTTACAAGGAATGCAGTGGAGGGTCATGGAATTAGAGAAATTCTGTAGGAAAATGCAAGTTCAAATGGCAAAGATCACAAAATCAAAAGCATCAGGCAATAGTTATACAAAATCTTTGCCAAAGCTATGCTCATGA 1629 0.3929 MEACCCNLEVDVNGEETFMVDKSVITQYSNKFARLFGKSSGATGKLKVIFHDFPGGAEGFELMLKFCYNNGTADISPSNLFLARCAAEYMEMKEPVADVSNLLELTEKSLQEINYWTWSDVLIALKQCQNLLVLDCSVMVERCLDTIVGRLVLASEASPCPSTSSTDSSWIRFSCDSKSTESAKTSFTRLTWWFEDLLFLSPLLVAMLVKSMLARKMDHVLISRFLIYYQKAKFSTSTTNEKSKIIEMVIDMHSDMDLSCVPCKTLFGILRVTLGLNISKCSRNKLETMIGSQLDQATLDNLLVPSPYGISYLYDVNLVLRFLKAFLRRGNGPVTPIRMRKVASLIDLYTAEIAPDPCLKTSKFLALATALPDSARDSYDEIYHAIDMYLEVHAQLSQEERMKICCVLNYEKLSPQACLHLSQNKKFPSKSAVQALISQQYKLKNLLHVTPSTSSYNDSPCSSSGAAQKVKKDKTSEEVVLYAGNFDLSTDNEKLKAHLQGMQWRVMELEKFCRKMQVQMAKITKSKASGNSYTKSLPKLCS* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1105 542 ProSiteProfiles NPH3 domain profile. 191 442 IPR027356 -
Pvu11g1105 542 Gene3D Potassium Channel Kv1.1; Chain A 2 120 IPR011333 -
Pvu11g1105 542 SUPERFAMILY POZ domain 5 99 IPR011333 -
Pvu11g1105 542 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 542 - -
Pvu11g1105 542 PANTHER OS12G0117600 PROTEIN 12 542 IPR043454 -
Pvu11g1105 542 Pfam NPH3 family 191 418 IPR027356 -
Pvu11g1105 542 ProSiteProfiles BTB domain profile. 6 70 IPR000210 GO:0005515
Pvu11g1105 542 SMART BTB_4 6 107 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1105 Pvu-Chr11 12798740 12802516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1105 18 522 EF-hand Containing Proteins AT3G44820 28.319 1.46e-56 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1105 - - gmx:100784792 988.408